Pairwise Alignments

Query, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella loihica PV-4

Subject, 354 a.a., DNA-directed DNA polymerase from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  338 bits (868), Expect = 1e-97
 Identities = 177/336 (52%), Positives = 229/336 (68%), Gaps = 1/336 (0%)

Query: 2   KKIIHVDMDCFFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARKFGVRSAMASAY 61
           +KIIH+D DCF+AA+EMRD P+L GKP+AVGG ++RRGVI+TCNYEAR +GVRSAM+S +
Sbjct: 4   RKIIHIDCDCFYAAIEMRDEPDLAGKPLAVGGSAERRGVIATCNYEARAYGVRSAMSSRH 63

Query: 62  ALKLCPDLILVPGRMSVYKEVSAQIREVFARYTELIEPLSLDEAYLDVSDCTQHQGSATL 121
           ALKLCPDL +V  RM  YKE S +I  +F  YT+LIEPLSLDEA+LDVS+     GSAT 
Sbjct: 64  ALKLCPDLTIVKPRMDAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVSEAGHFSGSATR 123

Query: 122 IAEAIRREIFEVTGLTASAGIAPVKFLAKIASDLNKPNGQYVITPQMIPEFVKTLALIKI 181
           IA+ IRR +     +T SAG+AP KFLAKIASD  KPNG +VITP  + EFV +L + K+
Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEEFVASLPVTKL 183

Query: 182 PGVGKVTAAKLETMGLITCADVQACSRQSLMERFGKFGGVLYDRAQGIDPRGISPHRERK 241
            GVGKVTA KL  +G++ CAD+++ S+ +L+  FG FG  L+  A GID R +     R+
Sbjct: 184 HGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGERLWSLAHGIDDRPVQNDSRRQ 243

Query: 242 SVGVETTLAKDIYTYEQCQAVMPQLIQELSGRISRSAKSRRIHKQVVKLKFDDFKQTTIE 301
           SV VE T   D+     C   +P L++ LSGR++R     R  K  VK+KF DF QTT+E
Sbjct: 244 SVSVENTYDTDLPDLAACLEKLPDLLETLSGRMARMEGQYRPGKPFVKVKFHDFTQTTLE 303

Query: 302 QRSDEVSVKLFYDLLKQALERRAGRGIRLLGVSVGL 337
           Q      +  +  LL QA   R G+ +RLLG+ V L
Sbjct: 304 QSGAGRDLGSYEQLLAQAF-ARGGKPVRLLGIGVRL 338