Pairwise Alignments

Query, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella loihica PV-4

Subject, 361 a.a., DNA polymerase IV from Rhizobium sp. OAE497

 Score =  286 bits (733), Expect = 5e-82
 Identities = 173/347 (49%), Positives = 220/347 (63%), Gaps = 23/347 (6%)

Query: 1   MKKIIHVDMDCFFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARKFGVRSAMASA 60
           ++KIIHVDMD F+A+VE RD PELRGKP+AVGG +  RGV++  +YEARKFGV SAM S 
Sbjct: 9   IRKIIHVDMDAFYASVEQRDNPELRGKPLAVGGAA-ARGVVAAASYEARKFGVHSAMPSV 67

Query: 61  YALKLCPDLILVPGRMSVYKEVSAQIREVFARYTELIEPLSLDEAYLDVSDCTQHQGSAT 120
            A + CPDLI V  R  VY+ VS QIRE+FA YT LIEPLSLDEAYLDV++  +    AT
Sbjct: 68  TAARKCPDLIFVTPRFEVYRAVSQQIREIFAEYTPLIEPLSLDEAYLDVTENLKDMPIAT 127

Query: 121 LIAEAIRREIFEVTGLTASAGIAPVKFLAKIASDLNKPNGQYVITPQMIPEFVKTLALIK 180
            IA  IR  I  VTGL ASAGI+  KFLAK+ASDLNKPNGQ VITP+  P FV+ LA+ K
Sbjct: 128 EIALEIRARIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPAFVEGLAVKK 187

Query: 181 IPGVGKVTAAKLETMGLITCADVQACSRQSLMERFGKFGGVLYDRAQGIDPRGISPHRER 240
             GVG  TA K+  +G+ T AD++A S Q L + FGK G   Y  A+GID R + P R R
Sbjct: 188 FHGVGPATAEKMHRLGIQTGADLKAQSLQFLTDHFGKAGPYFYGIARGIDERRVKPDRIR 247

Query: 241 KSVGVETTLAKDIYTYEQCQAVMPQLIQELSGRISRSAKSRRIHKQVV--KLKFDDFKQT 298
           KSVG E T A+DI++Y+       + ++ L  ++ R  ++  I  + V  K+K+ DF Q 
Sbjct: 248 KSVGAEDTFAQDIHSYDPAL----EGVRPLIAKVWRYCETNPIRAKTVTLKVKYADFTQI 303

Query: 299 TIEQ----------RSDEVSVKLFYDLLKQALERRAGRGIRLLGVSV 335
           T  +            DEV   L   +          +GIRLLGV++
Sbjct: 304 TRSRTVARSFLSACEIDEVVASLLKSIFP------LPQGIRLLGVTL 344