Pairwise Alignments

Query, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella loihica PV-4

Subject, 351 a.a., DNA polymerase IV from Erwinia amylovora T8

 Score =  384 bits (985), Expect = e-111
 Identities = 200/338 (59%), Positives = 252/338 (74%), Gaps = 1/338 (0%)

Query: 1   MKKIIHVDMDCFFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARKFGVRSAMASA 60
           M+KIIHVDMDCFFAAVEMRD P LR  PIA+GG   +RGVIST NY AR++GVRSAM++A
Sbjct: 1   MRKIIHVDMDCFFAAVEMRDNPSLRDIPIAIGGSEMQRGVISTANYPAREYGVRSAMSTA 60

Query: 61  YALKLCPDLILVPGRMSVYKEVSAQIREVFARYTELIEPLSLDEAYLDVSDCTQHQGSAT 120
            ALKLCP L ++ GR   YKE S QIR++F+RYT LIEPLSLDEAYLDV+D    QGSAT
Sbjct: 61  MALKLCPHLTVIRGRYEAYKEASGQIRDIFSRYTALIEPLSLDEAYLDVTDSPHCQGSAT 120

Query: 121 LIAEAIRREIFEVTGLTASAGIAPVKFLAKIASDLNKPNGQYVITPQMIPEFVKTLALIK 180
           LIA  IR  I +   LTASAG+AP+KFLAKIASD+NKPNGQ+VITP+ +P+F++ L L K
Sbjct: 121 LIARQIRDTICQELNLTASAGVAPIKFLAKIASDINKPNGQFVITPEQVPDFLQRLPLAK 180

Query: 181 IPGVGKVTAAKLETMGLITCADVQACSRQSLMERFGKFGGVLYDRAQGIDPRGISPHRER 240
           IPGVG+VTA KLE +GL TCADVQ      L++RFGKFG VL++R  GID R +   RER
Sbjct: 181 IPGVGRVTARKLEELGLNTCADVQKSDLALLLKRFGKFGRVLWERCNGIDDREVIVERER 240

Query: 241 KSVGVETTLAKDIYTYEQCQAVMPQLIQELSGRISRSAKSRRIHKQVVKLKFDDFKQTTI 300
           KS+GVE TL++DI+++E C  ++  L  EL  R+S+    R I +Q +KLKF DF+QTT 
Sbjct: 241 KSLGVERTLSQDIHSWEACLEIIDLLYDELERRLSKIKPDRLIARQGIKLKFTDFQQTTQ 300

Query: 301 EQRSDEVSVKLFYDLLKQAL-ERRAGRGIRLLGVSVGL 337
           E    E+  +    + +++  ERRAGRG+RL+G+ V L
Sbjct: 301 EHVWPELDKEDLIAVARKSWDERRAGRGVRLVGLHVTL 338