Pairwise Alignments

Query, 457 a.a., DNA repair protein RadA (RefSeq) from Shewanella loihica PV-4

Subject, 460 a.a., predicted repair protein (NCBI) from Escherichia coli BW25113

 Score =  345 bits (884), Expect = 2e-99
 Identities = 191/456 (41%), Positives = 283/456 (62%), Gaps = 10/456 (2%)

Query: 5   KTAYVCSECGQDFPRWQGQCNACGEWNTISEVRLAPAKSSAGS--VAGYAGAVGGGS-KK 61
           K A+VC+ECG D+PRWQGQC+AC  WNTI+EVRLA +   A +  ++GYAG+ G    +K
Sbjct: 6   KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65

Query: 62  LSEVEEFEAKKLLTGIGELDRVLCGGLTTGSVNIISGDPGAGKTTILSDLVSRMSQLMPS 121
           LS++   E  +  TG  E DRVL GG+  GS  +I G+PGAGK+T+L   + +++Q M +
Sbjct: 66  LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT 125

Query: 122 LYCTAEESLSQFKNRVNRLRLDCNEENLYLMAETNVEAIIAELEAKQVKFAVIDSIQAVV 181
           LY T EESL Q   R +RL L    +NL +++ET++E I    E +Q K  VIDSIQ + 
Sbjct: 126 LYVTGEESLQQVAMRAHRLGLPT--DNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMH 183

Query: 182 TDLANGSPGSPSQVKGSAQALTQYCKQNNVTMFLVAHVNKNNETAGPQTLIHIVDCLTHL 241
                 SPGS +QV+ +A  LT++ K   V + +V HV K+   AGP+ L H +DC   L
Sbjct: 184 MADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLL 243

Query: 242 ECN-DGQVRTLRANKNRFGDVDTVGIFRMTERGMLSVDNPSEIFLSGSTTESPGAAITCI 300
           + + D + RTLR++KNRFG V+ +G+F MTE+G+  V NPS IFLS     + G+++  +
Sbjct: 244 DGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVV 303

Query: 301 RKGNRNLLLEIQCLTTEAEGEFPQRVCVGLNMNRIKMLTGILRKHTRTKIY-HDTYFNLV 359
            +G R LL+EIQ L   +    P+RV VGL  NR+ +L  +L +H   ++   D + N+V
Sbjct: 304 WEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVV 363

Query: 360 GGLKIDESETCIDLALVAALLSSLNEFVVPRTTCIMGELSLNGDVRPIDSGVPRVKEAVQ 419
           GG+K+  +ET  DLAL+ A++SSL +  +P+   + GE+ L G++RP+ SG  R+ EA +
Sbjct: 364 GGVKV--TETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAK 421

Query: 420 HGFTEIFIPFRNYHKSMEGLGAKINPIKTIHELLEL 455
           HGF    +P  N  K     G +I  +K + + L +
Sbjct: 422 HGFRRAIVPAANVPKKAPE-GMQIFGVKKLSDALSV 456