Pairwise Alignments

Query, 408 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 626 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  354 bits (908), Expect = e-102
 Identities = 189/409 (46%), Positives = 263/409 (64%), Gaps = 4/409 (0%)

Query: 1   MLFSQLSLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPIL 60
           M F+ L L   L +A+EA  ++E T +Q  AIP VL G DLM +AQTGTGKT  FALPIL
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  AKLMGLAQAEGSDK----QPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIE 116
            +L      + S +    QPR LVL PTRELA QVH     +AR     +  ++GGV + 
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120

Query: 117 AQCQQLAAGVDLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMAL 176
            Q Q ++ GVD++VA PGRLLDL  +G+  L  V  LV DEADRMLDMGF  ++ +++A 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 177 LPSERQTLLFSATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDSERKFALL 236
           LP++RQ LLFSAT    + AL+ + L  P+RI V+P N+  + +EQRV+ + +  K ALL
Sbjct: 181 LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL 240

Query: 237 SHLINKGDWQRVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEI 296
           +HLI  G W++VLVF+R K  A++LA  L + G+ A A HG+  Q AR + LADF+ G +
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV 300

Query: 297 KVLVATDVAARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALL 356
           ++LVATD+AARG+DI+ L +VVN+ELP V +DYVHRIGRTGRAG+ G A++L   ++  L
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 357 LEEIEALLDKRLPQQWLPGFEPDLTKADPNPRRNGKAAQKRRAKRRGQG 405
           L+ IE +  +++    L GF+    +A+    R     +  R  R  +G
Sbjct: 361 LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKG 409