Pairwise Alignments

Query, 408 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  363 bits (932), Expect = e-105
 Identities = 197/416 (47%), Positives = 271/416 (65%), Gaps = 11/416 (2%)

Query: 1   MLFSQLSLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPIL 60
           M F+ L L   L +A+EA  +++ T +Q  AIP VL G DLM +AQTGTGKT  FALPIL
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  AKLMGLAQAEGSDK----QPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIE 116
            +L      + S +    QPR LVL PTRELA QVH     +AR   L +  ++GGV + 
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 117 AQCQQLAAGVDLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMAL 176
            Q Q +A GVD++VA PGRLLDL  +G   L  V  LV DEADRMLDMGF  ++ +++A 
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 177 LPSERQTLLFSATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDSERKFALL 236
           LP++RQ LLFSAT    +  L+ + L  P+RI V+P N+  + +EQRVY + +  K ALL
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240

Query: 237 SHLINKGDWQRVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEI 296
           +HLI  G W++VLVF+R K  A++LA  L +QG+ A A HG+  Q AR + LADF+   +
Sbjct: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300

Query: 297 KVLVATDVAARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALL 356
           +VLVATD+AARG+DI+ L +VVN+ELP V +DYVHRIGRTGRAG+ G A++L   ++  L
Sbjct: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 357 LEEIEALLDKRLPQQWLPGF-----EPDLTKADPNPRRNGKAAQKRRAKRRGQGGR 407
           L+ IE +  +R+    L GF     E +  +A   P+ NG+  + ++A  RG+GG+
Sbjct: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQA--RGEGGK 414