Pairwise Alignments

Query, 408 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

 Score =  389 bits (998), Expect = e-112
 Identities = 211/409 (51%), Positives = 279/409 (68%), Gaps = 5/409 (1%)

Query: 1   MLFSQLSLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPIL 60
           M F  L L   + +A+    + E T IQ +AIP VL G DLMASAQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  AKLMGLAQAEGSDKQP-RALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQC 119
             L+   Q     ++P RAL+L PTRELA Q+ + + D++++ ++ + +V+GGVSI  Q 
Sbjct: 61  QHLI-TRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQM 119

Query: 120 QQLAAGVDLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLPS 179
            +L  GVD++VATPGRLLDL  + A KLD V  LV DEADRMLDMGF  +I  ++  LP+
Sbjct: 120 MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179

Query: 180 ERQTLLFSATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDSERKFALLSHL 239
           +RQ LLFSAT  D + AL+ + L  P  I V+ +N+AS  V Q V+ VD +RK  LLSH+
Sbjct: 180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHM 239

Query: 240 INKGDWQRVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIKVL 299
           I KG+WQ+VLVF+R K  A+ LA +L + GI + A HG+  QGAR + LADF+ G+I+VL
Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299

Query: 300 VATDVAARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALLLEE 359
           VATD+AARG+DIE L +VVNYELP V +DYVHRIGRTGRA   G A++L C ++  LL +
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359

Query: 360 IEALLDKRLPQQWLPGFEPDLTKADPNPRRNGKAAQKRRAKRRGQGGRR 408
           IE LL K +P+  +PG+EPD       P +NG+  Q+R    RGQGG R
Sbjct: 360 IEKLLKKEIPRIAIPGYEPD-PSIKAEPIQNGR--QQRGGGGRGQGGGR 405