Pairwise Alignments

Query, 1010 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

Subject, 1248 a.a., sensory box/GGDEF domain/EAL domain protein from Pseudomonas fluorescens GW456-L13

 Score =  434 bits (1115), Expect = e-125
 Identities = 274/790 (34%), Positives = 421/790 (53%), Gaps = 31/790 (3%)

Query: 227  IKVNPRLCKMLKYSETELLNRTWTELTYFEDLKADMTQFQRMLKGEIDAYEMDKRFVAKD 286
            ++VN    + +     +++ +T T L  +          QR+  G I   EM  R   + 
Sbjct: 462  LEVNDAFEEQIGLKAEDVIGQTATNLNIWGIPGVGPGLLQRLQAGSIRNLEMPFR---RS 518

Query: 287  GEIVYTHLTVACRRNHNMVDMVIAGLIDITEHKRADMAMRTSQERLALVLESSDLGMWDW 346
               V+T L  A   + +M   ++  + DIT+ K     ++TS+E+ A    +S  G+   
Sbjct: 519  NGHVFTGLISAEPFDLDMTPALVVVVRDITQLKETQQQLQTSEEKFAKAFHASPDGL--- 575

Query: 347  DIKSNET-----KRNPWCAKVLGCD----LERLNRDSRIWIDAIHPQDRMAVL--NSIDR 395
             + S ++     + N   +++ G +    ++R   D  IW++    +  + +L  +   R
Sbjct: 576  -LLSRQSDGLLLEVNDGFSRITGFNSAMSVDRSALDLGIWVNLNERKQMLDLLRRDGFVR 634

Query: 396  HLKGETQKHYIEYRLISLSGEEHWILDTGKVVSRDRNGLPTRMCGVHSDITEQKKVQESL 455
                  ++   + RL  +S     I D   +++  R            DITE+  +QE L
Sbjct: 635  DFSCHIRRSDGQIRLCEVSSRPLPIGDDDCMLTIAR------------DITERHLMQEKL 682

Query: 456  ELAASVYNNSSEAMSVQDHKGHIITINAAFTAITGYSQEEALTQNIRILQSSRTPRSQYD 515
            + AA+V+ +++E + + D + HI  +N AFT ITGYS+ EAL    R+L S     + Y 
Sbjct: 683  QQAATVFESTAEGVLITDTQQHISAVNRAFTEITGYSENEALGHTPRLLASGLHDSAFYA 742

Query: 516  EMNSAIRDTGYWQGELWIKNKSGEEYMVWLTINTIFDQHGQVYRRVALFSDITEKKEAEH 575
             M   +   G+WQGE+  + K+GE Y  WLTI+ + ++   +   VA+F+DI+  K A+ 
Sbjct: 743  AMWHQLTAEGHWQGEISNRRKNGELYPSWLTISAVRNRENFITHFVAVFADISSLKHAQA 802

Query: 576  IIWKQANYDPLTGLPNRRMLLEYLNTEILRIDRNHSHFALMFLDLDFFKEVNDTLGHDMG 635
             +  QA++DPLTGLPNR +    L T +     N    A++FLDLD FK +ND+LGH +G
Sbjct: 803  KLDYQAHHDPLTGLPNRTLFESRLLTALNSQQENGGQGAVLFLDLDRFKHINDSLGHPVG 862

Query: 636  DLLLQETAKRLKGCIRESDVVARLGGDEFTVVLSGIDSPSGVERVAQSILERIAEPYSLG 695
            DLLL+  A RLK  +R+ D VARLGGDEF ++L G+   S  + +A  +L   A P+  G
Sbjct: 863  DLLLKGIAVRLKEQLRDIDTVARLGGDEFIILLPGLQQSSDADHIATKLLNCFAAPFQAG 922

Query: 696  DETAYISASIGITIYPDDATSIEGLLKHADQAMYAAKEQGRNRFHYFTPSMQEYARYRMA 755
            +   +ISASIG ++YP D   +  L+K+AD AMY +K +GRNR   +T  +   A  R+A
Sbjct: 923  EHEFFISASIGTSLYPKDGCDVATLIKNADAAMYRSKAKGRNRVESYTRDLTAQASERVA 982

Query: 756  LIKDLRNAINRKEFELFYQPIVDMNKLGVYKAEALIRWVHPQRGLVSPGEFIPVAEETGL 815
            L  +LR AI R E  L YQP + +    +  AEALIRW HP  G V    FIP+AEE G+
Sbjct: 983  LEHELRRAIERNELRLCYQPKISLEDYSLVGAEALIRWHHPTFGDVPREHFIPLAEENGM 1042

Query: 816  INEIGNWVFEKAAQQSARWRTQHGVEIQISINKSPIQFRDEGDTFSDWLALLRHLELSSN 875
            I +IG+WV E A +Q A W   +     +S+N +  Q R + +       LL+   L+  
Sbjct: 1043 ILQIGDWVLETACRQMAEWHRLYENPGPLSVNLAGAQLR-QPNLLGRIEQLLKDNGLNPG 1101

Query: 876  AICVEITEGLLLDASMGVTDKLLAYRDAGIQVSLDDFGTGYSSLAYLKKFDIDYLKIDQS 935
             + +EITE  ++  +      L   +  G+Q+++DDFGTGYSSL+YLK+  +D LKIDQS
Sbjct: 1102 FLQLEITENFIMSQAEEALAVLHQLKQLGVQLAIDDFGTGYSSLSYLKRLPLDILKIDQS 1161

Query: 936  FTRNLESDSDGVALCEAIIVMAHKLGIKVIAEGVETQFQHDILASAGCDFAQGYLYSKPV 995
            F R L  D    A+  AII +   +   VIAEGVET  Q   LA+ GC+  QGY+ S P+
Sbjct: 1162 FVRGLPDDPHDAAIVRAIIALGRSMQFTVIAEGVETHAQQQFLAAEGCEQIQGYIVSLPL 1221

Query: 996  SLPEFERLYV 1005
               EF   ++
Sbjct: 1222 PPDEFAATFL 1231



 Score = 47.0 bits (110), Expect = 8e-09
 Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 18/217 (8%)

Query: 289 IVYTHLTVACRRNHNMVDMVIAGLIDITEHKRADMAMRTSQERLALVLESSDLGMWDWDI 348
           ++ T L V  R N  +    IA  +D+ +       +R+S+     ++ES     W+  +
Sbjct: 278 LLTTVLAVVIRINRRL-SSEIARRVDLEQE------LRSSEYHYRGLVESLSAIAWEAKV 330

Query: 349 KS-NETKRNPWCAKVLGCDLERLNRDSRIWIDAIHPQDRMAVLNSIDRHLKGETQKHYIE 407
                +  +P    +LG  L         W + IHP D        D  +    + H ++
Sbjct: 331 TDFTYSYVSPHAEDLLGYPLSHWLIPG-FWRNIIHPADLTRAQTFCDHEVLAG-RDHRLD 388

Query: 408 YRLISLSGEEHWILDTGKVVSRDRNGLPTRMCGVHSDITEQKKVQESLELA----ASVYN 463
           YR+I+  G   W+ D   +VS   +G    + G+  DIT+ K+ +E+L L+    ASV+ 
Sbjct: 389 YRVITADGRCLWVRD---IVSLIEHGHEPVLRGLMIDITDAKRTEEALRLSEQKFASVFQ 445

Query: 464 NSSEAMSV-QDHKGHIITINAAFTAITGYSQEEALTQ 499
              + + + +   G ++ +N AF    G   E+ + Q
Sbjct: 446 QCPDILVIARLSDGCLLEVNDAFEEQIGLKAEDVIGQ 482



 Score = 44.3 bits (103), Expect = 5e-08
 Identities = 68/286 (23%), Positives = 130/286 (45%), Gaps = 47/286 (16%)

Query: 67  DTRSVVLAISGLFFGGLPTFVAASVACAYRLFQG---GDGMLVGVTVILVSALFGSLWRY 123
           D  S V ++  L   GL  +V+      Y+L  G    + MLVG+           L + 
Sbjct: 192 DLASSVWSLRQLKLDGL--YVSGETPYRYQLAMGVPRNNKMLVGI-----------LDKV 238

Query: 124 YRKTTIADLSFIELYLFGFLLHFSTLSLLFILPFSMFVDLLVQIALPVMLIFPIVTALLG 183
               + A++S I+ +  G +L   T           + DLLV   LP +L+   V A++ 
Sbjct: 239 LADMSPAEISAIQEHWVGNVLDHRTF----------WSDLLVY-GLPGLLLLTTVLAVV- 286

Query: 184 MMLARRLEVERDAKIQLQDDFIFRSQFNVGNMGIAITSV-------DQHWIKVNPRLCKM 236
           + + RRL  E   ++ L+ + +  S+++   +  +++++       D  +  V+P    +
Sbjct: 287 IRINRRLSSEIARRVDLEQE-LRSSEYHYRGLVESLSAIAWEAKVTDFTYSYVSPHAEDL 345

Query: 237 LKYSETE-LLNRTWTELTYFEDLKADMTQFQRMLKGEIDA---YEMDKRFVAKDGEIVYT 292
           L Y  +  L+   W  + +     AD+T+ Q     E+ A   + +D R +  DG  ++ 
Sbjct: 346 LGYPLSHWLIPGFWRNIIH----PADLTRAQTFCDHEVLAGRDHRLDYRVITADGRCLWV 401

Query: 293 HLTVACRRNHNMVDMVIAGL-IDITEHKRADMAMRTSQERLALVLE 337
              V+   + +  + V+ GL IDIT+ KR + A+R S+++ A V +
Sbjct: 402 RDIVSLIEHGH--EPVLRGLMIDITDAKRTEEALRLSEQKFASVFQ 445



 Score = 32.0 bits (71), Expect = 3e-04
 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 2/107 (1%)

Query: 216 GIAITSVDQHWIKVNPRLCKMLKYSETELLNRTWTELTYFEDLKADMTQFQRMLKGEIDA 275
           G+ IT   QH   VN    ++  YSE E L  T   L       A        L  E   
Sbjct: 695 GVLITDTQQHISAVNRAFTEITGYSENEALGHTPRLLASGLHDSAFYAAMWHQLTAE-GH 753

Query: 276 YEMDKRFVAKDGEIVYTHLTVACRRN-HNMVDMVIAGLIDITEHKRA 321
           ++ +     K+GE+  + LT++  RN  N +   +A   DI+  K A
Sbjct: 754 WQGEISNRRKNGELYPSWLTISAVRNRENFITHFVAVFADISSLKHA 800