Pairwise Alignments
Query, 1010 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4
Subject, 1247 a.a., Sensory box protein from Pseudomonas putida KT2440
Score = 435 bits (1118), Expect = e-125
Identities = 271/790 (34%), Positives = 427/790 (54%), Gaps = 31/790 (3%)
Query: 227 IKVNPRLCKMLKYSETELLNRTWTELTYFEDLKADMTQFQRMLKGEIDAYEMDKRFVAKD 286
++VN + + +++ RT T+L + + +R+ +G I EM F +
Sbjct: 461 LEVNEAFEEQIGLPPDQVIGRTATDLDLWGVEGSGPLLLERLHQGGIRNLEMS--FRRSN 518
Query: 287 GEIVYTHLTVACRRNHNMVDMVIAGLIDITEHKRADMAMRTSQERLALVLESSDLGMWDW 346
G++ +T LT A + ++ + DI++ K ++TS+E+ A +S G+
Sbjct: 519 GQL-FTGLTSAETFELDGTPALVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGL--- 574
Query: 347 DIKSNET-----KRNPWCAKVLGCDL----ERLNRDSRIWIDAIHPQDRMAVLN--SIDR 395
+ S ++ + N ++ G DL ++ + D IW+D + + LN R
Sbjct: 575 -LLSRQSDGLLLEVNEGFCRLTGYDLNPTIDQTSLDLGIWVDLNERKRLVDQLNRDGFVR 633
Query: 396 HLKGETQKHYIEYRLISLSGEEHWILDTGKVVSRDRNGLPTRMCGVHSDITEQKKVQESL 455
++ + RL LS I +++ + DITE+ +QE L
Sbjct: 634 DFTCHIRRSDGQIRLCELSARPLPITGVDCMLT------------IARDITERHLMQEKL 681
Query: 456 ELAASVYNNSSEAMSVQDHKGHIITINAAFTAITGYSQEEALTQNIRILQSSRTPRSQYD 515
+LAA+V+ N++E + + D I +N AF+ ITGYS+ EAL Q R+L S + + Y
Sbjct: 682 QLAATVFENTAEGVLITDIDQRISAVNRAFSEITGYSEIEALGQTPRLLASGQHDSAFYL 741
Query: 516 EMNSAIRDTGYWQGELWIKNKSGEEYMVWLTINTIFDQHGQVYRRVALFSDITEKKEAEH 575
M + G+WQGE++ K K+GE Y WLTI+ + + ++ VA+F+DI+ K A+
Sbjct: 742 AMWHQLTAEGHWQGEIYNKRKNGELYPSWLTISAVRNSDREITHFVAVFADISSIKHAQA 801
Query: 576 IIWKQANYDPLTGLPNRRMLLEYLNTEILRIDRNHSHFALMFLDLDFFKEVNDTLGHDMG 635
+ QA++DPLTGLPNR + L + ++ A++FLDLD FK +ND+LGH +G
Sbjct: 802 KLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQVSNRQGAVLFLDLDRFKHINDSLGHPVG 861
Query: 636 DLLLQETAKRLKGCIRESDVVARLGGDEFTVVLSGIDSPSGVERVAQSILERIAEPYSLG 695
DLLL+ A+RLK +R+ D VARLGGDEF ++L G+ PS +A +L P+ G
Sbjct: 862 DLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKPSDASTIANKLLACFNAPFQAG 921
Query: 696 DETAYISASIGITIYPDDATSIEGLLKHADQAMYAAKEQGRNRFHYFTPSMQEYARYRMA 755
+ + SASIGI++YP D T + L+++AD AMY +K +GRNR +T + A R+A
Sbjct: 922 EHEFFTSASIGISLYPQDGTDVSTLIRNADAAMYRSKAKGRNRVEAYTRDLTAQASERIA 981
Query: 756 LIKDLRNAINRKEFELFYQPIVDMNKLGVYKAEALIRWVHPQRGLVSPGEFIPVAEETGL 815
L +LR A+ R E L +QP + + + AEALIRW HP G V P FI +AEE G
Sbjct: 982 LEHELRRAVERNEMSLCFQPKLSLKTQSLVGAEALIRWSHPTFGEVPPEHFIHLAEENGT 1041
Query: 816 INEIGNWVFEKAAQQSARWRTQHGVEIQISINKSPIQFRDEGDTFSDWLALLRHLELSSN 875
I ++G+WV E+A +Q W+ + +SIN + Q R LL+H +L +
Sbjct: 1042 ILQLGDWVLEQACRQMQAWKQHYQPFGPLSINLAGAQLR-HPHLARRIEQLLKHHQLKAG 1100
Query: 876 AICVEITEGLLLDASMGVTDKLLAYRDAGIQVSLDDFGTGYSSLAYLKKFDIDYLKIDQS 935
+ +EITE ++ + L + G+Q+++DDFGTGYSSL+YLK+ +D LKID+S
Sbjct: 1101 DLQLEITENFIMSQAEEALAVLYQLKKLGVQLAIDDFGTGYSSLSYLKRLPLDILKIDKS 1160
Query: 936 FTRNLESDSDGVALCEAIIVMAHKLGIKVIAEGVETQFQHDILASAGCDFAQGYLYSKPV 995
F R L D A+ AII + + + +IAEGVE Q Q LA+ GC+ QGY+ S P+
Sbjct: 1161 FIRGLPDDPHDAAIARAIIALGRSMQLTIIAEGVENQAQQRFLAAEGCEQIQGYIVSLPL 1220
Query: 996 SLPEFERLYV 1005
EF ++
Sbjct: 1221 PPEEFAAAFL 1230
Score = 50.4 bits (119), Expect = 8e-10
Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 11/190 (5%)
Query: 314 DITEHKRADMAMRTSQERLALVLESSDLGMWDWDIKS-NETKRNPWCAKVLGCDLERLNR 372
+I+ + +R+S+ ++ES W+ D + +P +LG L R
Sbjct: 295 EISRRIALEQELRSSEYHYRGLVESLSAIAWEADANDFTYSYVSPHAEDLLGYPLSDWLR 354
Query: 373 DSRIWIDAIHPQDRMAVLNSIDRHLKGETQKHYIEYRLISLSGEEHWILDTGKVVSRDRN 432
W +HP+D + D + H ++YR+I G+ W+ + +VS +
Sbjct: 355 PG-FWRSILHPEDALWAQAYCDSETAAG-RDHSLDYRVIRADGQPLWVRN---IVSMIEH 409
Query: 433 GLPTRMCGVHSDITEQKKVQESLELA----ASVYNNSSEAMSVQDHK-GHIITINAAFTA 487
G M G+ DI+E K+ +++L L+ ASV+ + + + H G ++ +N AF
Sbjct: 410 GHQPVMRGLMIDISETKRTEDALRLSEQKFASVFQQCPDILLIARHSDGCLLEVNEAFEE 469
Query: 488 ITGYSQEEAL 497
G ++ +
Sbjct: 470 QIGLPPDQVI 479
Score = 37.7 bits (86), Expect = 5e-06
Identities = 77/372 (20%), Positives = 151/372 (40%), Gaps = 59/372 (15%)
Query: 159 MFVDLLVQIALPVMLIFPIVTALLGMMLARRLEVERDAKIQLQDDFIFRSQFNVGNMGIA 218
MF L+ LP +L+ V A++ + + RRL E +I L+ + + S+++ + +
Sbjct: 262 MFWSDLLVYGLPTVLLLMAVLAVV-IRINRRLSSEISRRIALEQE-LRSSEYHYRGLVES 319
Query: 219 ITSV-------DQHWIKVNPRLCKMLKYSETELLNRT-WTELTYFEDLKADMTQFQRMLK 270
++++ D + V+P +L Y ++ L W + + ED
Sbjct: 320 LSAIAWEADANDFTYSYVSPHAEDLLGYPLSDWLRPGFWRSILHPEDALWAQAYCDSETA 379
Query: 271 GEIDAYEMDKRFVAKDGEIVYTHLTVACRRNHNMVDMVIAGLIDITEHKRADMAMRTSQE 330
D + +D R + DG+ ++ + H ++ +IDI+E KR + A+R S++
Sbjct: 380 AGRD-HSLDYRVIRADGQPLWVR-NIVSMIEHGHQPVMRGLMIDISETKRTEDALRLSEQ 437
Query: 331 RLALVLESSDLGMWDWDIKSNETKRNPWCAKVL-------GCDLERLNRDSRIWIDAIHP 383
+ A V + C +L GC LE +N I P
Sbjct: 438 KFASVFQQ--------------------CPDILLIARHSDGCLLE-VNEAFEEQIGL--P 474
Query: 384 QDRMAVLNSIDRHLKGE--------TQKHYIEYRLISLS-GEEHWILDTGKVVSR--DRN 432
D++ + D L G + H R + +S + L TG + + +
Sbjct: 475 PDQVIGRTATDLDLWGVEGSGPLLLERLHQGGIRNLEMSFRRSNGQLFTGLTSAETFELD 534
Query: 433 GLPTRMCGVHSDITEQKKVQESLELA----ASVYNNSSEAMSV-QDHKGHIITINAAFTA 487
G P + V DI++ K+ Q+ L+ + A ++ S + + + + G ++ +N F
Sbjct: 535 GTPALVVAVR-DISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSDGLLLEVNEGFCR 593
Query: 488 ITGYSQEEALTQ 499
+TGY + Q
Sbjct: 594 LTGYDLNPTIDQ 605
Score = 31.6 bits (70), Expect = 4e-04
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 216 GIAITSVDQHWIKVNPRLCKMLKYSETELLNRTWTELTYFEDLKADMTQFQRML--KGEI 273
G+ IT +DQ VN ++ YSE E L +T L + A L +G
Sbjct: 694 GVLITDIDQRISAVNRAFSEITGYSEIEALGQTPRLLASGQHDSAFYLAMWHQLTAEGHW 753
Query: 274 DAYEMDKRFVAKDGEIVYTHLTVACRRNHNM-VDMVIAGLIDITEHKRA 321
+KR K+GE+ + LT++ RN + + +A DI+ K A
Sbjct: 754 QGEIYNKR---KNGELYPSWLTISAVRNSDREITHFVAVFADISSIKHA 799