Pairwise Alignments

Query, 256 a.a., exonuclease IX (RefSeq) from Shewanella loihica PV-4

Subject, 281 a.a., Ssb-binding protein, misidentified as ExoIX from Escherichia coli BL21

 Score =  175 bits (443), Expect = 1e-48
 Identities = 102/251 (40%), Positives = 146/251 (58%), Gaps = 12/251 (4%)

Query: 5   LIIDGLNLVRRIHAAQPNENDVNGLP--ERVTSACRKLLSKHNPSHVTLVWDGDAIS--W 60
           LI+D LNL+RRIHA Q       G P  E    A  +L+    P+H   V+D +  S  W
Sbjct: 36  LIVDALNLIRRIHAVQ-------GSPCVETCQHALDQLIMHSQPTHAVAVFDDENRSSGW 88

Query: 61  RKKLYDDYKKGRKPMPEALSQALPALKQHLAERGFHSIDAIA-EADDVIATLASKMVQAK 119
           R +   DYK GR PMPE L   +PAL+    +RG         EADD+ ATLA K+ QA 
Sbjct: 89  RHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLAATLAVKVTQAG 148

Query: 120 GEAIIVSTDKGFTQLLSPQIQLWDHFNQQAITIEDRERQLGVDRSQFIDFLAMAGDSGNK 179
            +A IVSTDKG+ QLLSP +++ D+F ++ +     +++ GV   Q  D+  +AG S +K
Sbjct: 149 HQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDYWGLAGISSSK 208

Query: 180 IPGIPGIGPKSACELLKTFRTLANVYASLDKIGAKQAKKLEEGRALARLSYKLVQLQTDI 239
           +PG+ GIGPKSA +LL  F++L  +Y +LD +  K  KKLE  + +A L   + +LQTD+
Sbjct: 209 VPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKKLETHKEMAFLCRDIARLQTDL 268

Query: 240 PLNTRLANFRV 250
            ++  L   R+
Sbjct: 269 HIDGNLQQLRL 279