Pairwise Alignments

Query, 405 a.a., Na(+)-translocating NADH-quinone reductase subunit F (RefSeq) from Shewanella loihica PV-4

Subject, 678 a.a., Oxidoreductase, FAD-binding from Pseudomonas putida KT2440

 Score = 71.6 bits (174), Expect = 6e-17
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 43/292 (14%)

Query: 115 KTDMELELEEEIFGVKKWQCEVISNDNQATFIKELLLKLPEGEDVKFKAGGYIQIEAPAH 174
           + D  LE  ++      W+  V+  + ++  I+   L+ P G  V F  G ++ ++ P  
Sbjct: 315 EADARLEQRQQQRQWLAWR--VLRVEQESRDIRSFYLEPPAGCRVAFAPGQHLPVQVP-- 370

Query: 175 EVKYSDFDIPTEYRDDWEKYGLFDLVSTVEEDVLRAYSMANYPDEKGVIMLNVRIATPPS 234
                        RD              E  ++R YS+++ PD+ G + ++V+   P S
Sbjct: 371 -------------RDG-------------ESALIRTYSLSSAPDD-GFLRISVKAQGPAS 403

Query: 235 EGLPPGKMSSYIFNLKAGDKVTISGPFGEFFV-KETDAEMVFIGGGAGMAPMRSHIFNQL 293
             L           + AGD + +  P G F + +++   +V IG G G+ P+ + +  QL
Sbjct: 404 RYLHE--------RVVAGDVLNVRPPMGSFTLDQQSTRPLVLIGAGVGITPLLAMLRQQL 455

Query: 294 KGEQTKRKMTFWYGARSRREIFYQEEFDALAAE-NDNFEWHVALSDPLPEDNWDGYTGFI 352
           +  Q +R   F +GARS  ++ +Q+E  AL  +  D  + H ALS P           F 
Sbjct: 456 RTGQARRIHLF-HGARSLADLPFQQELAALRQQAGDLLQVHRALSQPEGHAQVGRDYEFA 514

Query: 353 HNVLYENYLKNHKAPEDCEFYMCGPPIMNSSVINMLESLGVEQENILLDDFG 404
             +  E  +K   A +D +FY+CGP      +   L  + V    I  + FG
Sbjct: 515 GRLGIEQ-VKATLALDDYDFYLCGPGSFTQQLYEGLRGVHVPDARIHAEAFG 565



 Score = 24.6 bits (52), Expect = 0.009
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 51  GDKLLGALASKNIFIPSACGGGGTCGQCRVKVKSG 85
           G   L  LA      P     GG+CG C+ ++ SG
Sbjct: 606 GSGTLLELAEARGLAPEFSCRGGSCGTCKTRLVSG 640