Pairwise Alignments

Query, 1157 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella loihica PV-4

Subject, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

 Score = 1303 bits (3372), Expect = 0.0
 Identities = 669/1170 (57%), Positives = 842/1170 (71%), Gaps = 28/1170 (2%)

Query: 6    FVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGAGIKPI 65
            FVHLR+H+++S+ DGL ++KP++       M A+A+TD  N+C LVKFY    GAGIKPI
Sbjct: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64

Query: 66   VGCDFFMLVPGFEDEFCSLTVLAMNNEGYKNLTLLISDAYLRGHVKDRAVIDQAWLERYS 125
             G D ++     ++    +++LAMN  GY+NLT LIS  ++ G      +I++ W+   S
Sbjct: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEAS 124

Query: 126  EGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDRYYLELIRTGRPDEERYLHMA 185
            EGLI+LS AK+G++G ALL GN  + + L   +   FPDR+YLE+ RT RP++E +LH A
Sbjct: 125  EGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHAA 184

Query: 186  VELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTLADPRRPRRYSEQQYFRIQDE 245
            V LA +   P+VATN V FI+ E FEAHE RV I +G  L DPRR + YSE+QY +  +E
Sbjct: 185  VALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAEE 244

Query: 246  MCELFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGD-LSIEDFLVEVSKKGLEERL 304
            M ELF D+PEAL+NSVEIAKRCN+ V+LG++FLPNFP  D ++I+++  +VS  GLEERL
Sbjct: 245  MAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEERL 304

Query: 305  EFLFPDEAQR--AERRGEYDERLDVELTVINNMGFPGYFLIVMEFIQWGKDNGIPIGPGR 362
              L P +       +R  Y +RL+ EL +I  MGFPGYFLIVM+FIQW K+NG+P+GPGR
Sbjct: 305  SVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPGR 364

Query: 363  GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAELY 422
            GSGAGSLVAY  KITDLDPLE+DLLFERFLNPERVSMPDFDVDFCMD RD VI++VAE Y
Sbjct: 365  GSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKY 424

Query: 423  GRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKMIPAEPGMTLAKAFEAEPALP 482
            GR+AVSQIITFG+MAAKAV+RDV RV G  YG  DR+SKMIP E GMTL KA+E E  L 
Sbjct: 425  GRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILR 484

Query: 483  EAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGVVIAPTVITDFAPLYCDAEGHNPVTQFD 542
            +    DEE  ++ DM R LEGV RN GKHAGGVVIAPT +TDF+P+YCD EG   VTQFD
Sbjct: 485  DFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFD 544

Query: 543  KNDVETAGLVKFDFLGLRTLTIIDWALQMINPHLAKQGKEPVRIEAIVLDDPASFRLLQR 602
            K+DVE AGLVKFDFLGLRTLTIIDWAL+ IN   AK  +EP+ I  I LDD  ++ LLQ+
Sbjct: 545  KDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQK 604

Query: 603  YETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREEVS 662
             ETTAVFQLESRGMK+LIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI RKHGR E++
Sbjct: 605  AETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELA 664

Query: 663  YPDQQWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAK 722
            YP   +Q+E LKP+L PTYGIILYQEQVMQIAQV+AGYTLGGADMLRRAMGKKKPEEMAK
Sbjct: 665  YPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAK 724

Query: 723  QRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPAQF 782
            QR  F EG   N +D +LA  IFDLVEKFAGYGFNKSHSAAY LVSYQT WLK H+PA F
Sbjct: 725  QRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPF 784

Query: 783  MAAVMSADMDNTDKIVTLVDECERMGLPLLPPDVNKGLFRFTVDDDLNIVYGIGAIKGVG 842
            MAAV+SADM NTDK+VTL++E   M L L  PDVN   F+FTV+D+  I+YG+GAIKGVG
Sbjct: 785  MAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAIKGVG 844

Query: 843  EGPVESILKAREDGPFIDLFDFCARVDLKKLNRRVIEKLICAGALDNLGPH--------- 893
            EGPVE+I +AR+DGPF DLFDFCARVDLK++N+R ++ LI +GALD LGP+         
Sbjct: 845  EGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEPKAYQ 904

Query: 894  ------RAAMMATLPEAIRAADQHAKAEAIGQHDMF-GLLNSEPEDNKQQFVHCTPWPDK 946
                  RA ++  + EAI+AA+Q A+    G  D+F GL   E  D             K
Sbjct: 905  ANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKELTLK 964

Query: 947  VWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTTKAAGLVVATRVMMT 1006
              L+GE+DTLGLYLTGHPI++Y  E++ +   R+ D+ P     T   AG+++A RVM  
Sbjct: 965  ERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPAR--DTQTVAGMIIALRVMKN 1022

Query: 1007 KRGSKMGLVTLDDKSARLEVMLFTEAFEKFGELLEKDRILIVEGEVSFDDFSGGNRMTAR 1066
            K+G KMG +TLDD+S R+E  LF +AF     LL+ D +++VEGEVS DDFSGG R+  +
Sbjct: 1023 KKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLRIK 1082

Query: 1067 SIIDMGEARSHFAHAVEVDLDGASITPE---WLGQFQQAVEPWKAGSVPLVINYAQPTAK 1123
             ++ M +AR++ A ++ + +   ++  +   WLG+  +       G+ P+ + Y    AK
Sbjct: 1083 RVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLKR----HRGACPVTMEYTGSDAK 1138

Query: 1124 AQFRLGDEWRVNPTDELMLALETLTGSDKV 1153
            A  + G+ WR++P D L+ AL    G D V
Sbjct: 1139 AMLQFGETWRIDPADGLIQALRDQFGRDNV 1168