Pairwise Alignments

Query, 1157 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella loihica PV-4

Subject, 1188 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  964 bits (2491), Expect = 0.0
 Identities = 531/1200 (44%), Positives = 744/1200 (62%), Gaps = 62/1200 (5%)

Query: 6    FVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGAGIKPI 65
            F HLR+H++FS+ DG  ++  ++A A+ D   ALA+TD +NL G VKFY    GAG+KPI
Sbjct: 2    FTHLRLHTEFSVVDGTNRIDDVVAAAAADGQPALAITDLSNLFGAVKFYKEARGAGVKPI 61

Query: 66   VGCDFFMLVPGFEDEFCSLT------------VLAMNNEGYKNLTLLISDAYLRGHVKDR 113
            +G +  +L+ GF +E                 +L  + +GY NL+ L++ A+ R   + +
Sbjct: 62   IGAE--VLLQGFTEETPGAMPGSQQAPVPRALLLVQDKQGYLNLSELLARAWTRNDGRGQ 119

Query: 114  AVIDQAWLERYSEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDRYYLELIRT 173
            A++ + WL+  + GLI++SGA+ G VG+AL++G+  +   +     + F  R+Y+EL R 
Sbjct: 120  ALVQRDWLQECNAGLIMISGAQAGPVGQALMQGDAQRAADVALQLSSIFTHRFYIELQRA 179

Query: 174  GRPDEERYLHMAVELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTLADPRRPRR 233
            GR D+ER++  AV+LA    LPVVAT+ V F++ + +EAHE RV I++G  L + RR RR
Sbjct: 180  GRADDERHVAQAVQLAARLHLPVVATHPVQFLEADDYEAHEARVCIAEGEILGNNRRVRR 239

Query: 234  YSEQQYFRIQDEMCELFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTG-----DLSI 288
            ++ +QYF+   +M  LF D+P AL NSVEI +RCN+T+ LG+  LPNFPT       + +
Sbjct: 240  FTREQYFKSAAQMQALFADVPSALANSVEIVRRCNLTLVLGKPQLPNFPTPLIDGVPMPM 299

Query: 289  EDFLVEVSKKGLEERLEFLFPDEAQRAERRGEYDERLDVELTVINNMGFPGYFLIVMEFI 348
             DF  + S +GLEERL  L+PD A+R   R  Y ERL+ E+  I NMGFPGYFLIV +FI
Sbjct: 300  ADFFRQSSFEGLEERLAHLYPDTAKRDAERPRYVERLEFEINTILNMGFPGYFLIVGDFI 359

Query: 349  QWGKDNGIPIGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 408
             W K+NG P+GPGRGSGAGSLVAYALKITDLDPL+++LLFERFLNPERVSMPDFD+DFC 
Sbjct: 360  NWAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQ 419

Query: 409  DRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKMIPAEPG 468
              RD VID+V + YG++AVSQI TFGT+AA+A +RDVGRVL   YGF D ISK+IP +PG
Sbjct: 420  TNRDRVIDYVKDKYGKEAVSQIATFGTLAARAAIRDVGRVLDFSYGFCDGISKLIPNKPG 479

Query: 469  MTLA---------------KAFEAEPALPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAG 513
            M++                 A E EP L E    +++VK LI++ + LEG+TRN G HAG
Sbjct: 480  MSVTLQYPPAQKKEGDKNNYAIEMEPVLAERIQKEDDVKTLIELAQKLEGMTRNIGMHAG 539

Query: 514  GVVIAPTVITDFAPLYCDAEGHNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMIN 573
            GV+IAP  +TDF PLY      + V+Q+DK+DVE  GLVKFDFLGL TLTI++ A + I 
Sbjct: 540  GVLIAPGKLTDFCPLYAQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIM 599

Query: 574  PHLAKQGKEPVRIEAIVLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIA 633
                  G+E  R E + L+D   + L  R +T AVFQ ESRGM+ ++K  +P   ED+IA
Sbjct: 600  KR--HPGQENFRFEDVPLNDAKVYALFSRGQTEAVFQFESRGMQGMLKDAKPSRLEDLIA 657

Query: 634  LVALFRPGPLQSGMVDNFIERKHGREEVSYPDQQWQHESLKPILEPTYGIILYQEQVMQI 693
            L AL+RPGP+   ++ +F+ RKHG+E + YP     H  +  +L  TYGI++YQEQVMQ 
Sbjct: 658  LNALYRPGPMD--LIPSFVNRKHGKETIEYP-----HPLVAEMLSETYGIMVYQEQVMQT 710

Query: 694  AQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGELAMKIFDLVEKFAG 753
            AQ+L GY+LGGADMLRRAMGKKK EEMA+ R +F  GA KN +  E A ++FDL+EKFAG
Sbjct: 711  AQILGGYSLGGADMLRRAMGKKKAEEMAEHREIFRAGAAKNDISQEKADEVFDLMEKFAG 770

Query: 754  YGFNKSHSAAYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLLP 813
            YGFNKSH+AAY+L++Y T WLK H+ A+F  A M+ +MD+TDK+  L ++ ++MG+    
Sbjct: 771  YGFNKSHAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKMGISFEA 830

Query: 814  PDVNKGLFRFTVDDDLNIVYGIGAIKGVGEGPVESILKAR----------EDGPFIDLFD 863
            PDVN+G  RF    + +I YG+GAIKG G+  +E+I+ AR          E GPF  LFD
Sbjct: 831  PDVNRGFHRFEPITNKSIRYGLGAIKGTGQQAIEAIVAAREGRGEGPRGDETGPFKSLFD 890

Query: 864  FCARVDLKKLNRRVIEKLICAGALDNLGPHRAAMMATLPEAIR-AADQHAKAEAIGQHDM 922
            FC RVD  +LN+R +E LI AGA D++  +RA M+A++  A   AA   A A   G  DM
Sbjct: 891  FCVRVDRTRLNKRTVEALIKAGAFDSMNLNRAEMLASVDRAFEFAAATLANANQGGLFDM 950

Query: 923  FGLLNSEPEDNKQQFVHCTPWPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKD 982
             G  +      +   V   PW  K  L  E+  +G Y +GH  ++  +E++ +    L D
Sbjct: 951  MGDDDHGSSTQEPDLVATMPWGVKERLTLEKTAMGFYFSGHLFDEVQREVRRFARTPLGD 1010

Query: 983  VHPTERGKTTKAAGLVVATRVMMTKRGSKMGLVTLDDKSARLEVMLFTEAFEKFGELLEK 1042
            V   E       AG+V   RV+  +RG K+ L  LDDK+   E             LL+ 
Sbjct: 1011 V--VESRDPVILAGIVTDFRVINGQRG-KLALFKLDDKTGVFETSADENLINMHRNLLKD 1067

Query: 1043 DRILIVEGEVSFDDFSGGNRMTARSIIDMGEARSHFAHAVEVDLDG-----ASITPEWLG 1097
            D +++V+     D FSGG R+  + I D+  AR  F   + V ++G     A++  E+  
Sbjct: 1068 DELIVVQAVAQPDRFSGGVRLKIQQIWDLAAARCRFGKYLRVAVNGTAPSVAALVREFPP 1127

Query: 1098 QFQQAVEPWKAGSVPLVINYAQPTAKAQFRLGDEWRVNPTDELMLALETLTGSDKVRILF 1157
            + +   +      +P+ +   +  A+ + +L D     PTD  + +        +  I+F
Sbjct: 1128 KREVTEQGELVRGLPVRLALLREGAQCELQLDDRALFFPTDAALASWMAQAHEQRAEIVF 1187