Pairwise Alignments

Query, 1157 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella loihica PV-4

Subject, 1160 a.a., DNA polymerase III subunit alpha (NCBI) from Escherichia coli BW25113

 Score = 1720 bits (4455), Expect = 0.0
 Identities = 854/1159 (73%), Positives = 980/1159 (84%), Gaps = 2/1159 (0%)

Query: 1    MSEPRFVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGA 60
            MSEPRFVHLRVHSD+SM DGLAK  P++ KA+   M ALA+TD TNLCGLVKFYG  HGA
Sbjct: 1    MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60

Query: 61   GIKPIVGCDFFMLVPGFEDEFCSLTVLAMNNEGYKNLTLLISDAYLRGHVKDRAVIDQAW 120
            GIKPIVG DF +      DE   LTVLA NN GY+NLTLLIS AY RG+     +ID+ W
Sbjct: 61   GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120

Query: 121  LERYSEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDRYYLELIRTGRPDEER 180
            L   +EGLILLSG + GDVG++LL+GN   VD  VAFY+ HFPDRY+LELIRTGRPDEE 
Sbjct: 121  LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180

Query: 181  YLHMAVELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTLADPRRPRRYSEQQYF 240
            YLH AVELA  + LPVVATN V FI    F+AHEIRVAI DGFTL DP+RPR YS QQY 
Sbjct: 181  YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240

Query: 241  RIQDEMCELFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDLSIEDFLVEVSKKGL 300
            R ++EMCELF DIPEAL N+VEIAKRCNVTVRLGEYFLP FPTGD+S ED+LV+ +K+GL
Sbjct: 241  RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300

Query: 301  EERLEFLFPDEAQRAERRGEYDERLDVELTVINNMGFPGYFLIVMEFIQWGKDNGIPIGP 360
            EERL FLFPDE +R +RR EYDERL+ EL VIN MGFPGYFLIVMEFIQW KDNG+P+GP
Sbjct: 301  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360

Query: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420
            GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM++RD+VI+HVA+
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420

Query: 421  LYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKMIPAEPGMTLAKAFEAEPA 480
            +YGRDAVSQIITFGTMAAKAV+RDVGRVLGHPYGFVDRISK+IP +PGMTLAKAFEAEP 
Sbjct: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480

Query: 481  LPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGVVIAPTVITDFAPLYCDAEGHNPVTQ 540
            LPE Y+ADEEVK LIDM R LEGVTRNAGKHAGGVVIAPT ITDFAPLYCD EG +PVTQ
Sbjct: 481  LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540

Query: 541  FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPHLAKQGKEPVRIEAIVLDDPASFRLL 600
            FDK+DVE AGLVKFDFLGLRTLTII+WAL+MIN   AK G+ P+ I AI LDD  SF +L
Sbjct: 541  FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600

Query: 601  QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE 660
            QR ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFI+RKHGREE
Sbjct: 601  QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660

Query: 661  VSYPDQQWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM 720
            +SYPD QWQHESLKP+LEPTYGIILYQEQVMQIAQVL+GYTLGGADMLRRAMGKKKPEEM
Sbjct: 661  ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720

Query: 721  AKQRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPA 780
            AKQRSVF EGA KNG++ ELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK H+PA
Sbjct: 721  AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA 780

Query: 781  QFMAAVMSADMDNTDKIVTLVDECERMGLPLLPPDVNKGLFRFTVDDDLNIVYGIGAIKG 840
            +FMAAVM+ADMDNT+K+V LVDEC RMGL +LPPD+N GL+ F V+DD  IVYGIGAIKG
Sbjct: 781  EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG 840

Query: 841  VGEGPVESILKAR-EDGPFIDLFDFCARVDLKKLNRRVIEKLICAGALDNLGPHRAAMMA 899
            VGEGP+E+I++AR + G F +LFD CAR D KKLNRRV+EKLI +GA D LGPHRAA+M 
Sbjct: 841  VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN 900

Query: 900  TLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDNKQQFVHCTPWPDKVWLEGERDTLGLY 959
            +L +A++AADQHAKAEAIGQ DMFG+L  EPE  +Q +  C PWP++V L+GER+TLGLY
Sbjct: 901  SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY 960

Query: 960  LTGHPINQYLKELKHYTSG-RLKDVHPTERGKTTKAAGLVVATRVMMTKRGSKMGLVTLD 1018
            LTGHPINQYLKE++ Y  G RLKD+HPTERGK   AAGLVVA RVM+TKRG+++G+ TLD
Sbjct: 961  LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD 1020

Query: 1019 DKSARLEVMLFTEAFEKFGELLEKDRILIVEGEVSFDDFSGGNRMTARSIIDMGEARSHF 1078
            D+S RLEVMLFT+A +K+ +LLEKDRILIV G+VSFDDFSGG +MTAR ++D+ EAR  +
Sbjct: 1021 DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY 1080

Query: 1079 AHAVEVDLDGASITPEWLGQFQQAVEPWKAGSVPLVINYAQPTAKAQFRLGDEWRVNPTD 1138
            A  + + L    I  + L + +Q++EP ++G++P+ + Y +  A+A+ R G  WRV+P+D
Sbjct: 1081 ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD 1140

Query: 1139 ELMLALETLTGSDKVRILF 1157
             L+  L  L GS++V + F
Sbjct: 1141 RLLNDLRGLIGSEQVELEF 1159