Pairwise Alignments

Query, 1157 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella loihica PV-4

Subject, 1167 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score =  810 bits (2091), Expect = 0.0
 Identities = 491/1180 (41%), Positives = 689/1180 (58%), Gaps = 51/1180 (4%)

Query: 1    MSEPRFVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGA 60
            +  P FVHLRVHS +S+ +G   +K I++KA  D   A+A+TD  NL   ++F       
Sbjct: 15   LKTPGFVHLRVHSAYSLLEGALPLKKIMSKAVGDGQPAIAITDTNNLFVALEFSEKARDE 74

Query: 61   GIKPIVGCDFFM-LVPGFED---------EFCSLTVLAMNNEGYKNLTLLISDAYLRGHV 110
            G++PI+GC   + +    ED         +  ++ +LA N EGY+ L  L+S AYL G  
Sbjct: 75   GLQPIIGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAANAEGYERLVDLVSRAYLDGEG 134

Query: 111  KDRAV-IDQAWLERYSE-GLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDRYYL 168
               +V I +AWLE  S  GLI L+GA  G V  AL +G+  Q    +   ++ F DR Y+
Sbjct: 135  GSHSVHITRAWLEEASNAGLIALTGASGGPVDMALKEGHAAQAKERLLTLKSLFGDRLYI 194

Query: 169  ELIRTGRPDEERYLHMAVELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTLADP 228
            EL R    D      + + LA E D+P+VATN+  F     +EAH+  +A++    ++D 
Sbjct: 195  ELQRQSGYDRSHERRL-IGLAYEHDIPLVATNEAFFPSKADYEAHDALMAVAHNAIVSDD 253

Query: 229  RRPRRYSEQQYFRIQDEMCELFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFP------ 282
             R  R +   Y + +DEM  LF D+PEAL+N+VEIA RC+  ++     LP F       
Sbjct: 254  SR-FRLTPDHYLKSRDEMTALFADLPEALENTVEIALRCSYVLKKRGPILPRFTGASDDP 312

Query: 283  -TGDLSIEDFLVEVSKKGLEERLEFLFPDEAQRAERRGEYDERLDVELTVINNMGFPGYF 341
               + +  + L   + +GL++RL  L        +   +Y ERLD EL VI+ M FPGYF
Sbjct: 313  EAAERAETEELRRQAVEGLDQRLSALGMAPGYTEQ---DYRERLDFELGVISRMKFPGYF 369

Query: 342  LIVMEFIQWGKDNGIPIGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPD 401
            LIV +FI+W K   IP+GPGRGSGAGSLVAYAL ITD+DPL F LLFERFLNPERVSMPD
Sbjct: 370  LIVADFIKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPD 429

Query: 402  FDVDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISK 461
            FD+DFC DRR+EVI +V   YGR+ V+QIITFG++ A+A +RDVGRVL  PYG VD+I K
Sbjct: 430  FDIDFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICK 489

Query: 462  MIPAEPG--MTLAKAFEAEPALPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGVVIAP 519
            ++P  P     L+KA E EP L E  D +  V  L+D+ + +EG+ R+A  HA G+VI  
Sbjct: 490  LVPNNPANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGD 549

Query: 520  TVITDFAPLYCDAEGHNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPHLAKQ 579
              ++   P+Y D     PVTQF+   VE+AGLVKFDFLGL+TLT++  A+  +    AK+
Sbjct: 550  RPLSKLVPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFV----AKR 605

Query: 580  GKEPVRIEAIVLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFR 639
            G + V + AI L+D  ++ +L R ET  VFQ+ES GM+  +  ++PDC ED+IALVAL+R
Sbjct: 606  GIK-VDLAAIPLEDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYR 664

Query: 640  PGPLQSGMVDNFIERKHGREEVSYPDQQWQHESLKPILEPTYGIILYQEQVMQIAQVLAG 699
            PGP+++  V N   RKHG EE+     +  H ++  +L+ T G+I+YQEQVMQIAQVL+G
Sbjct: 665  PGPMENIPVYN--ARKHGEEEL-----ESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSG 717

Query: 700  YTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKS 759
            Y+LG AD+LRRAMGKK  EEM +QR  F +GA+KNGV    A  IFDL+ KFA YGFNKS
Sbjct: 718  YSLGEADLLRRAMGKKIKEEMDQQRERFVDGAIKNGVSKPQANTIFDLLAKFANYGFNKS 777

Query: 760  HSAAYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLLPPDVNKG 819
            H+AAYA+VSYQT ++K H+P +F+AA M+ DM NT+K+     +  R+G+ ++ P V   
Sbjct: 778  HAAAYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEVVAPSVQTS 837

Query: 820  LFRFTVDDDLNIVYGIGAIKGVGEGPVESILKAREDGPFIDLFDFCARVDLKKLNRRVIE 879
              +F   ++  I Y + AIKGVGEG VE I++ R + PF  L DFC R+D K++NRRV+E
Sbjct: 838  FRQFETGEN-RIYYSLAAIKGVGEGAVEHIVQVRGEKPFTSLEDFCLRIDPKQINRRVLE 896

Query: 880  KLICAGALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDNKQQFVH 939
             LI AGA D  G  RA ++  L   I  A        IGQ DMFG         K     
Sbjct: 897  SLINAGAFDCFGRDRAELIGGLDRIIGYAQMAQNNRTIGQSDMFG-SGGGTGPEKLILPA 955

Query: 940  CTPWPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVH-PTERGKTT--KAAG 996
               W     L  E   LG YLT HP++ Y   L+        D     ++G +T  + AG
Sbjct: 956  FQSWLPSEKLIREYQVLGFYLTAHPLDTYRPLLEKLRVQNFADFSAAVKQGASTVGRLAG 1015

Query: 997  LVVATRVMMTKRGSKMGLVTLDDKSARLEVMLFTEAFEKFGELLEKDRILIVEGEVSFDD 1056
             V   +   T+ G+KMG+VT  D S + E +LF+E   +F +LLE  + L++  +     
Sbjct: 1016 TVTGKQERKTRTGNKMGIVTFSDASGQYEAVLFSEGLAQFRDLLEVGKSLVINVQAEERP 1075

Query: 1057 FSGGNRMTARSIIDMGEARSHFAHAVEVDLDGASITPEWLGQFQQAVEPWKAGSVPLVIN 1116
               G R+     ++    +   A  V V   G       L    + +     GSV  ++ 
Sbjct: 1076 EGIGLRIQTAQSLEEKSVQMQKALRVYVRDSGP------LKTVARHLNTKGDGSVYFIVI 1129

Query: 1117 YAQPTAKAQFRLGDEWRVNPTDELMLALETLTGSDKVRIL 1156
              + + + +  L +++R++P  E+  AL +  G   V ++
Sbjct: 1130 KDEGSREIEVELTEKYRISP--EIAAALRSAPGVVDVELV 1167