Pairwise Alignments

Query, 578 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

Subject, 540 a.a., RluA family pseudouridine synthase from Phocaeicola dorei CL03T12C01

 Score =  468 bits (1205), Expect = e-136
 Identities = 247/542 (45%), Positives = 338/542 (62%), Gaps = 18/542 (3%)

Query: 25  FSTSIEGIALPERFTFPFYYEPHRLCELAASELQAHLEQQQTWQHNFGLTGPREGAIGKM 84
           F  SI  I LP++FT+PF+Y PH LC +A  E+Q +L  Q  WQ        +E   GKM
Sbjct: 5   FKNSIAAIKLPDKFTYPFHYTPHPLCIIATKEVQVYLASQSQWQ--------KELQQGKM 56

Query: 85  FGVLVVQKADGELGYLKAFSGKLAEQNLLPGFVPPVFDMLTQDSFFHGEQLAINQLTAEL 144
           FGVL+VQ  + ++GYL AFSG LA ++  P FVPP++D+L    FF  E+  I+ +   +
Sbjct: 57  FGVLIVQTPENKIGYLAAFSGTLASKSHHPFFVPPIYDLLQPQGFFKIEEEHISAINVRI 116

Query: 145 ESLQQAPELASLSDELNTLNAGKAAAVAELRAEIIENRKARKARRVAGERLDAQAFEDLQ 204
           +  Q  P    L  ++          + E +      +K R+ RR  G   DA+    + 
Sbjct: 117 KKTQNDPHYIDLLRQIEKETMQSQQELTEAKEFFKSAKKNREIRRKTGVP-DAKELAAMI 175

Query: 205 QQLGRESVAEKHRLRLLNEQWDSQIAEREHRLSALQDEIEVLKQQRASQSNALQRKLFAQ 264
               RES  +K  L+ + + W  +IA  +        +IE +K +R  +S  LQRKLF Q
Sbjct: 176 ----RESQFQKAELKRMEKMWKEKIASLQAEADTFITKIETMKIERKKRSATLQRKLFEQ 231

Query: 265 YCFLNQAGEVKDLNTLFSLSTKSLSPKGLPPAGAGECAAPKLLQFAFANGLKPVAMAEFW 324
           +  LN  GE KDL  +F+ + +       PPAGAGECAAPKLLQ+A+ + LKP+AMAEFW
Sbjct: 232 FQILNARGETKDLCRIFAQTIQKF-----PPAGAGECAAPKLLQYAYKHQLKPIAMAEFW 286

Query: 325 WGASPKSEVKQHKQFYGACHGKCEPILAHMLSGIALDDNPLLNNPAEGKDLSIIYQDEAI 384
           WG SPK+E++ H  +Y AC GKCEPIL HML G+ +++NPLL        L I+Y+D  +
Sbjct: 287 WGDSPKAEIRHHGYYYPACKGKCEPILKHMLQGLEVEENPLLKKHYHEIPLEIVYEDNYL 346

Query: 385 AVVNKPAEFLSVPGKHVTDSVYSRMRQAFPKATGPLIVHRLDMSTSGLMVIALSSEANTA 444
            VVNKPA  LSVPGK   DSVY  ++  +P ATGPLIVHRLDM+TSG+++IA + + +  
Sbjct: 347 VVVNKPAGMLSVPGKGEIDSVYQHIKTLYPDATGPLIVHRLDMATSGVLLIAKNKKVHQH 406

Query: 445 LVQQFIGRTVEKRYLARVAGEVQGEEGEITLPLRVDLDDRPRQLVCFEHGKHAHTYWLVK 504
           L  QF  R ++KRY+A + G++  +EG ITLPLR++  DRPRQ+V  EHGK A T + V 
Sbjct: 407 LQAQFKNRMIKKRYIALLDGKIPSKEGTITLPLRMNPLDRPRQIVDHEHGKTAITLYRVL 466

Query: 505 SRGEGTTLLSLFPKTGRTHQLRVHCAHQDGLGMPIIGDDLYGAKANRLHLHAQYLAFNHP 564
           +  EG TL++ +P TGRTHQLRVH AH +GL  PI GD+LYG KA+RL+LHA+ L F HP
Sbjct: 467 NEQEGRTLIAFYPLTGRTHQLRVHAAHPEGLHCPIRGDELYGRKADRLYLHAESLEFVHP 526

Query: 565 IS 566
           I+
Sbjct: 527 IT 528