Pairwise Alignments

Query, 364 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

Subject, 353 a.a., UPF0283 membrane protein YcjF from Escherichia coli ECOR38

 Score =  183 bits (465), Expect = 5e-51
 Identities = 113/329 (34%), Positives = 177/329 (53%), Gaps = 15/329 (4%)

Query: 24  ELKAAERFDDQVVFEDAERGELDEAALQALVPELDGIVSRSPSGA---RRRSWSWLAKAS 80
           E +A + FD+    ++     LDEA      PE +G V      A   +R  W  +    
Sbjct: 22  EFRAQQTFDENQA-QNFAPATLDEA------PEEEGQVEAVMDAALRPKRSLWRKMVMGG 74

Query: 81  LLGIGSILLVELGLTLREAWAQSPWLFGLYGSVTTIVSLWA-ITLGVKEWRQLRRLRAVE 139
           L   G+ ++ +       AW    W+  L G     + + A +   V EWR+L RLR   
Sbjct: 75  LALFGASVVGQGVQWTMNAWQTQDWV-ALGGCAAGALIIGAGVGSVVTEWRRLWRLRQRA 133

Query: 140 EAQAVSERLSQSMQRGEADKFIDRLITNLPEDID---TNRYYRLVHEEHNDAERLILFES 196
             +  +  L  S   G+   F ++L      D       R+Y  +HE  ND E + L+  
Sbjct: 134 HERDEARDLLHSHGTGKGRAFCEKLAQQAGIDQSHPALQRWYASIHETQNDREVVSLYAH 193

Query: 197 SVLPQVDAKAKKLVHRYASESALLLAASPIAVLDMAIILWRNQKMIAELARCYGIELGYW 256
            V P +DA+A++ + R A+ES L++A SP+A++DMA I WRN ++I  +A  YGIELGY+
Sbjct: 194 LVQPVLDAQARREISRSAAESTLMIAVSPLALVDMAFIAWRNLRLINRIATLYGIELGYY 253

Query: 257 SRIKLIRSVITNIIYAGTSEIVTDIGTQLFSLEMSGKISARLAQGLGGGLLTARLGYQTM 316
           SR++L + V+ NI +AG SE+V ++G    S +++ ++S R AQG+G GLLTARLG + M
Sbjct: 254 SRLRLFKLVLLNIAFAGASELVREVGMDWMSQDLAARLSTRAAQGIGAGLLTARLGIKAM 313

Query: 317 RLCRPVVFTPDSRPKLSKIHTALLGELKD 345
            LCRP+ +  D +P+L      L+G++K+
Sbjct: 314 ELCRPLPWLDDDKPRLGDFRRQLIGQVKE 342