Pairwise Alignments

Query, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella loihica PV-4

Subject, 370 a.a., class II histone deacetylase from Serratia liquefaciens MT49

 Score = 74.3 bits (181), Expect = 4e-18
 Identities = 68/253 (26%), Positives = 111/253 (43%), Gaps = 21/253 (8%)

Query: 46  SPEAVSLEWLKSIHCPDYVMQFIEQRLPDKAVRRLG--FPLSERLTQRTLYSVGGTHLAC 103
           S +  + E L  IH  DY+ +F  ++L D     LG   PL     +    S G    A 
Sbjct: 66  SADMATEEDLLRIHPADYLQRF--KQLSDNGGGMLGEEAPLGPGSYEIAKLSAGLACAAV 123

Query: 104 ELAVR----HGVALQLSGGYHHAHYQFGSGYCVFNDLISAALHAQSLAGIVTVLIFDCDV 159
           E  ++    +  AL    G HH       G+C   ++  A   A++  G+  V + D DV
Sbjct: 124 EAVLQGHLDNAYALSRPPG-HHCLPDQSMGFCFLANIPIAIERARAKYGLGKVAVLDWDV 182

Query: 160 HQGDGTAAMGQAYDNLYTCSIHCQENFPA-----------RKQTSDLDLELSRGVGDEEY 208
           H G+GT  +    D++ T S+H    FPA             +  ++++ L  G GD+ Y
Sbjct: 183 HHGNGTQHIYWQRDDVLTLSLHQDGCFPAGYSGEQDRGAGAGEGFNINVPLLAGAGDDGY 242

Query: 209 LEAVAQTLALAIRLYQPDLIIYDAGVDVHQADRLGHLNITTEGIYQRDRLVLDNA-KAAS 267
           L A+ Q +  A+  ++P+LII   G D +  D L  + + ++       LV D A +   
Sbjct: 243 LYAMRQIVIPALERFKPELIIVACGYDANALDPLARMQLHSDSFRSMTALVQDAADRLCD 302

Query: 268 IPIACVVGGGYSK 280
             +  V  GGY++
Sbjct: 303 GKLVMVHEGGYAE 315