Pairwise Alignments

Query, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella loihica PV-4

Subject, 304 a.a., deacetylase from Caulobacter crescentus NA1000 Δfur

 Score =  226 bits (575), Expect = 7e-64
 Identities = 121/291 (41%), Positives = 173/291 (59%), Gaps = 7/291 (2%)

Query: 3   PLVYHASYSQLALPHHHRFPITKYQALYQYLLDRQIVDPTAFHSPEAVSLEWLKSIHCPD 62
           P+V+H ++ +  +P  HRFP+ K+  L   L   ++  P  F  PE V +E L   H  D
Sbjct: 6   PIVHHPAF-RAEMPAGHRFPMDKFSRLAALLEAERVAGPDGFARPEPVDVETLCLAHSED 64

Query: 63  YVMQFIEQRLPDKAVRRLGFPLSERLTQRTLYSVGGTHLACELAVRHGVALQLSGGYHHA 122
           YV   IE  LP   VRR+G P +E +  R   + GGT LA  LA+  G+A   +GG HHA
Sbjct: 65  YVRGVIELSLPPDIVRRIGMPNTESVATRARAATGGTLLAARLALERGIACNTAGGSHHA 124

Query: 123 HYQFGSGYCVFNDLISAALHAQSLAGIVTVLIFDCDVHQGDGTAAMGQAYDNLYTCSIHC 182
               G+G+CVFND+  AA    +   I   L+ D DVHQGDGTA + +   +++T S+H 
Sbjct: 125 AADAGAGFCVFNDVAVAARRLLAEGAIGKALVVDLDVHQGDGTARIFENDPSVFTFSMHA 184

Query: 183 QENFPARKQTSDLDLELSRGVGDEEY---LEAVAQTLALAIRLYQPDLIIYDAGVDVHQA 239
           ++NFP RK +SDLD+ELS G  D  Y   LEA+   L +++R   PD++ ++AGVD H  
Sbjct: 185 EKNFPHRKASSDLDIELSDGTDDGAYLAKLEAILPALLISVR---PDIVFFNAGVDPHAD 241

Query: 240 DRLGHLNITTEGIYQRDRLVLDNAKAASIPIACVVGGGYSKEIEVLAERHA 290
           D+LG L +T EG+ +R+  VL    ++ IP+  V+GGGY  +I+ LA RHA
Sbjct: 242 DKLGRLALTDEGLARREAYVLGACLSSEIPVVGVIGGGYDADIDRLAARHA 292