Pairwise Alignments

Query, 795 a.a., DNA polymerase II (RefSeq) from Shewanella loihica PV-4

Subject, 786 a.a., DNA polymerase II from Pseudomonas sp. S08-1

 Score =  618 bits (1593), Expect = 0.0
 Identities = 356/805 (44%), Positives = 482/805 (59%), Gaps = 38/805 (4%)

Query: 4   KGRILTRHHQ----GSELHYYLSTAEGPARVIVPNGERICFC----RTQDELRLLGDNRE 55
           +G +LTRH +    G+E+ ++L++  GP RV +     + F     R + E +L G   E
Sbjct: 5   QGFVLTRHWRDTPAGTEVEFWLASDAGPRRVRLAPQPSVAFIPEVQRERAEAQLRG---E 61

Query: 56  SGIRSEALNLTTFQDEPVSALYFANNQSFRHLSRIATDKGISLYESELRAEQRYLIERYI 115
             +    L L  F+  P+  LY  +++    L +     G+ +YE+++R  +R+L+ER+I
Sbjct: 62  RDVELRPLGLRDFRQRPMLGLYCRSHRQLIKLDKQLRKAGVDVYEADIRPPERFLMERFI 121

Query: 116 ALDVEFIGRWQSQALDTPTLIAERARRSELDVNREVKLAVVSLDFECAMDGELFSVGLYG 175
              V F G          TL+  R +    D +    L + SLD E +  GEL+S+ + G
Sbjct: 122 TAPVSFGGTPGEDG----TLLDARLKP---DDSYRPTLRLASLDIETSERGELYSIAIEG 174

Query: 176 QSASGEPYQQVIMVGEACDSPPEY---LSLVPNEAALIKSLLDWFKLNDPDIIIGWAVVT 232
                   +QV M+G   +  PE    L    + A L++ L  W   +DPD IIGW +V 
Sbjct: 175 CGQ-----RQVYMLGARPEVAPEVDFDLEYCSSRAELLQRLNGWLAEHDPDAIIGWNLVQ 229

Query: 233 FDLALLYRRARALNIPLTLGRLGTQLSWRVDNKYRPETLILPGRVVLDGIDWLKAAFYQF 292
           FDL +L R A  L +PL  GR G  + WR    +        GR+++DGI+ L++A + F
Sbjct: 230 FDLRVLQRHAAELQVPLLFGRGGEPMEWREHASHNHYFAAAAGRLIIDGIEALRSATWSF 289

Query: 293 DSFSLESVARELLGEGKAIHNVSHRAEEIATLFREDKAALAHYNITDCRLVWEIFAKTDL 352
            SFSLE+VA+ LLGEGKAI     R +EI  +F ED+ ALA YN+ DC LV  IFA T L
Sbjct: 290 PSFSLENVAQTLLGEGKAIDTPYQRMDEINRMFAEDQPALARYNLKDCELVTRIFAHTRL 349

Query: 353 LAFVMERSRLTGLELGRVGASVAAFNNLYLPHLHRAGYVAPSVPVSDGIESPGGYVMDSK 412
           + F++ER+  TGL   R G SVAAF +LYLP +HR G+VAP++       SPGG+VMDS+
Sbjct: 350 IDFLLERAATTGLPADRSGGSVAAFTHLYLPAMHRMGFVAPNLGEKMPQASPGGFVMDSR 409

Query: 413 PGLYQHILVLDFKSLYPSIIRTFLIDPKGLVEGLKAEANAGVKGVREGNDTVPGFLGAQF 472
           PGLY+ +LVLD+KSLYPSIIRTFLIDP GL+EGL+           +   +V GF GA+F
Sbjct: 410 PGLYESVLVLDYKSLYPSIIRTFLIDPVGLIEGLREP---------DDEHSVEGFRGARF 460

Query: 473 SRNSPILPELIASLSAKREEAKREANAPLSQAIKIIMNSLYGVLGSRGCVFHDARLASSI 532
           SR    LP ++  +   RE AKRE NAPLSQA+KIIMN+ YGVLGS GC F D RLASSI
Sbjct: 461 SRTRHCLPAIVERVWQGREAAKREGNAPLSQALKIIMNAFYGVLGSSGCRFFDTRLASSI 520

Query: 533 TLRGHEIMKQTKQWIEALGLTVIYGDTDSTFVHISSPERVGDINAFARELVASINEKWRL 592
           TLRGH IMK+T++ IEA G  VIYGDTDSTFV +       D     R LVA +N+ WR 
Sbjct: 521 TLRGHAIMKRTRELIEAEGYRVIYGDTDSTFVWLGHEHAEEDAARIGRALVARVNQWWRE 580

Query: 593 KLKQEFQLECYLELEYERHFEQFFMPTLRGSTEGSKKRYVGAYRQEDQSLKLVFKGMEQV 652
            L++E  LE  LEL+YE H+ +F MPT+RG+ EGSKKRY G  R+ D S ++VFKG+E V
Sbjct: 581 HLREEMGLESALELQYESHYRRFLMPTVRGAEEGSKKRYAGLVRRADGSEEMVFKGLETV 640

Query: 653 RSDWSPLAREVQAELYYRLFAKQDVLGYLKQIVDALQRGELDDRLIFSKRLRRNIEDYTA 712
           R+DWSPLA+  Q ELY  +F ++    Y++  V     GELD+ LI+ KRLRR + DY  
Sbjct: 641 RTDWSPLAQRFQQELYRLIFERKPHQDYIRDYVRRTLAGELDELLIYRKRLRRKLGDYER 700

Query: 713 KSSPHVKAATLWCQ---RSGNDSHGKRGEKISYLMTQNGAEPVQHLLGKIDYQYYLDKQI 769
              PHV+AA L  +   R G     +RG  ISYL+T  G EP++     IDY++YL +Q+
Sbjct: 701 NVPPHVRAARLADEHNDRLGRPRQYQRGGSISYLITVAGPEPLETRAAAIDYEHYLTRQL 760

Query: 770 APISDPILSILNTSFNNLVAKQMSL 794
            PI+D IL  +   F  LV  Q+ L
Sbjct: 761 QPIADAILPFVGDDFTRLVNPQLGL 785