Pairwise Alignments

Query, 795 a.a., DNA polymerase II (RefSeq) from Shewanella loihica PV-4

Subject, 785 a.a., DNA polymerase II from Pseudomonas fluorescens SBW25

 Score =  627 bits (1618), Expect = 0.0
 Identities = 357/804 (44%), Positives = 487/804 (60%), Gaps = 37/804 (4%)

Query: 4   KGRILTRHHQ----GSELHYYLSTAEGPARVIVPNGERICFC----RTQDELRLLGDNRE 55
           +G +LTRH +    G+E+ ++L+T +GP  + +P    + F     R   +  L G   E
Sbjct: 5   QGFVLTRHWRDTPTGTEVSFWLATDQGPRFIRLPVQTSVMFVPEAHRKPLDWLLKG---E 61

Query: 56  SGIRSEALNLTTFQDEPVSALYFANNQSFRHLSRIATDKGISLYESELRAEQRYLIERYI 115
             I    L L  F   PV  LY   ++    + +     G+ +YE ++R  +RY++ER+I
Sbjct: 62  RDIELRPLQLCDFHHRPVLGLYTRQHRQAMDVEKRLRAAGVDVYEGDVRPPERYMMERFI 121

Query: 116 ALDVEFIGRWQSQALDTPTLIAERARRSELDVNREVKLAVVSLDFECAMDGELFSVGLYG 175
              V     W     DT  ++ +   +   D    +KL  VSLD E    G+L+S+ L G
Sbjct: 122 TAPV-----WFGGTPDTSGVLCDAQMKPAPDYRPPLKL--VSLDIETTAQGDLYSIALEG 174

Query: 176 QSASGEPYQQVIMVG--EACDSPPEYLSLVPNEAALIKSLLDWFKLNDPDIIIGWAVVTF 233
               GE  +QV M+G     D+    L      A L++ L +W   +DPD IIGW VV F
Sbjct: 175 ---CGE--RQVYMLGPPNKTDAVDFKLDYCDTRAQLLERLNEWLAQHDPDAIIGWNVVQF 229

Query: 234 DLALLYRRARALNIPLTLGRLGTQLSWRVDNKYRPETLILPGRVVLDGIDWLKAAFYQFD 293
           DL +L+  A+ LN+PL LGR    ++WR             GR+++DGI+ L++A + F+
Sbjct: 230 DLRVLHEHAQRLNVPLMLGRGDEPMAWREHGSRNHYFAAAAGRLIIDGIEALRSATWSFE 289

Query: 294 SFSLESVARELLGEGKAIHNVSHRAEEIATLFREDKAALAHYNITDCRLVWEIFAKTDLL 353
           SFSLE+VA+ LLGEGK I     R +EI  +F EDK ALA YN+ DC LV  IF KT+LL
Sbjct: 290 SFSLENVAQTLLGEGKDISTPYQRMDEINRMFAEDKPALARYNLKDCELVTRIFEKTELL 349

Query: 354 AFVMERSRLTGLELGRVGASVAAFNNLYLPHLHRAGYVAPSVPVSDGIESPGGYVMDSKP 413
            F++ER+ +TGL   R G SVAAF +LY+P +HR G+VAP++       SPGG+VMDS+P
Sbjct: 350 KFLLERASVTGLPADRNGGSVAAFTHLYMPLMHRQGFVAPNLGDKPPQASPGGFVMDSRP 409

Query: 414 GLYQHILVLDFKSLYPSIIRTFLIDPKGLVEGLKAEANAGVKGVREGNDTVPGFLGAQFS 473
           GLY+ +LVLD+KSLYPSIIR+FLIDP GL+EGLK           + +D+V GF GA+FS
Sbjct: 410 GLYESVLVLDYKSLYPSIIRSFLIDPVGLIEGLKYP---------DDSDSVEGFRGARFS 460

Query: 474 RNSPILPELIASLSAKREEAKREANAPLSQAIKIIMNSLYGVLGSRGCVFHDARLASSIT 533
           R    LP ++A +S  RE AKRE NAPLSQA+KIIMN+ YGVLGS GC F D RLASSIT
Sbjct: 461 RTRHCLPAIVARVSEGREVAKREHNAPLSQALKIIMNAFYGVLGSSGCRFFDTRLASSIT 520

Query: 534 LRGHEIMKQTKQWIEALGLTVIYGDTDSTFVHISSPERVGDINAFARELVASINEKWRLK 593
           +RGH+IM+QT++ +EA G  VIYGDTDSTFV + S     + +   R LV  +N+ WR  
Sbjct: 521 MRGHQIMRQTRELVEAQGYEVIYGDTDSTFVWLGSAHSQEEASRIGRGLVQHVNDWWREH 580

Query: 594 LKQEFQLECYLELEYERHFEQFFMPTLRGSTEGSKKRYVGAYRQEDQSLKLVFKGMEQVR 653
           L   F L+  LEL+YE HF +F MPT+RG+ EGSKKRY G   + D S  +V+KG+E VR
Sbjct: 581 LHTTFGLQSALELQYETHFTRFLMPTIRGAEEGSKKRYAGLVVRSDGSEDMVYKGLETVR 640

Query: 654 SDWSPLAREVQAELYYRLFAKQDVLGYLKQIVDALQRGELDDRLIFSKRLRRNIEDYTAK 713
           SDWSPLAR  Q ELY R+F +Q    Y++  V     GE D+ LI+ KRLRR ++DY   
Sbjct: 641 SDWSPLARRFQQELYQRIFHRQPHQDYIRDYVRRTLSGEFDELLIYRKRLRRRLDDYERN 700

Query: 714 SSPHVKAATL---WCQRSGNDSHGKRGEKISYLMTQNGAEPVQHLLGKIDYQYYLDKQIA 770
             PHV+AA L   +  R       +RG  ISY+++ NG EP++     IDY +Y+ +Q+ 
Sbjct: 701 VPPHVRAARLADEYNDRLNRPRQYQRGGWISYVISVNGPEPLEVRQAPIDYDHYVTRQLQ 760

Query: 771 PISDPILSILNTSFNNLVAKQMSL 794
           P++D IL  +N  F+ LV  QM L
Sbjct: 761 PVADAILPFVNDDFSTLVGGQMGL 784