Pairwise Alignments

Query, 795 a.a., DNA polymerase II (RefSeq) from Shewanella loihica PV-4

Subject, 785 a.a., DNA polymerase elongation subunit (family B) from Enterobacter asburiae PDN3

 Score =  604 bits (1557), Expect = e-177
 Identities = 351/809 (43%), Positives = 490/809 (60%), Gaps = 48/809 (5%)

Query: 4   KGRILTRHH----QGSELHYYLSTAEGPARVIVPNGERICF---CRTQDELRLLGDNRES 56
           +G +LTRH     QG+E+ ++L+T  GP  V +P  E + F      +   +LL    E+
Sbjct: 6   EGFLLTRHWRDTPQGTEVAFWLATDSGPLHVTLPPQESVAFIPEAHVEKVKQLL--RGEN 63

Query: 57  GIRSEALNLTTFQDEPVSALYFANNQSFRHLSRIATDKGISLYESELRAEQRYLIERYIA 116
           G R   L L  F  +PV  LY   ++      ++  + G++LYE+++R  +R+L+ER+I 
Sbjct: 64  GWRITPLELKDFHRQPVYGLYCRAHRQLMRYEKLLREAGVTLYEADIRPPERFLMERFIT 123

Query: 117 LDVEFIGRWQSQALDTPTLIAERARRSELDVNREVKLAVVSLDFECAMDGELFSVGLYGQ 176
             V   G  Q+  +    L      R  L          VSLD E    GEL+ +GL G 
Sbjct: 124 APVWVDGIEQNGGVVNARLKPNPHYRPPLKW--------VSLDIETTRHGELYCIGLEG- 174

Query: 177 SASGEPYQQVIMVG------EACDSPPEYLSLVPNEAALIKSLLDWFKLNDPDIIIGWAV 230
              G+  + V M+G       A D   EY++  P    L+  L  WF   DPD++IGW V
Sbjct: 175 --CGD--RVVYMLGPPNGDASALDFRLEYVNSRPQ---LLDKLNQWFADYDPDVLIGWNV 227

Query: 231 VTFDLALLYRRARALNIPLTLGRLGTQLSWRVDNKYRPETLILP--GRVVLDGIDWLKAA 288
           V FDL +L + A    IPL LGR  ++L WR ++ ++         GR+++DGI+ LK+A
Sbjct: 228 VQFDLRVLQKHAERYRIPLMLGRGNSELEWR-EHGFKNGVFFAQANGRLIIDGIEALKSA 286

Query: 289 FYQFDSFSLESVARELLGEGKAIHNVSHRAEEIATLFREDKAALAHYNITDCRLVWEIFA 348
           F+ F SFSLE+VA+ELLGEGK+I N   R +EI   F EDK ALA YN+ DC LV +IF 
Sbjct: 287 FWNFSSFSLEAVAQELLGEGKSIDNPWDRMDEIDRRFNEDKPALATYNLKDCELVTQIFH 346

Query: 349 KTDLLAFVMERSRLTGLELGRVGASVAAFNNLYLPHLHRAGYVAPSVPVSDGIESPGGYV 408
           KT+++ F++ER+ + GL + R G SVAAF++LY P +HRAGYVAP++       SPGGYV
Sbjct: 347 KTEIMPFLLERATVNGLAVDRHGGSVAAFSHLYFPRMHRAGYVAPNLGDVPPQASPGGYV 406

Query: 409 MDSKPGLYQHILVLDFKSLYPSIIRTFLIDPKGLVEGLKAEANAGVKGVREGNDTVPGFL 468
           MDS+PGLY  +LVLD+KSLYPSIIRTFLIDP GLVEG+            +   +  GFL
Sbjct: 407 MDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQP---------DDEHSTEGFL 457

Query: 469 GAQFSRNSPILPELIASLSAKREEAKREANAPLSQAIKIIMNSLYGVLGSRGCVFHDARL 528
           GA+FSR    LPE++ ++   R+EAKR  N PLSQA+KIIMN+ YGVLG+  C F D RL
Sbjct: 458 GARFSREKHCLPEIVGNIWHGRDEAKRHGNKPLSQALKIIMNAFYGVLGTSACRFFDPRL 517

Query: 529 ASSITLRGHEIMKQTKQWIEALGLTVIYGDTDSTFVHISSPERVGDINAFARELVASINE 588
           ASSIT+RGHEIM+QTK  IE+ G  VIYGDTDSTFV +       D      +LVA +N+
Sbjct: 518 ASSITMRGHEIMRQTKALIESRGYDVIYGDTDSTFVWLKGAHSEDDAARIGNDLVAFVND 577

Query: 589 KWRLKLKQEFQLECYLELEYERHFEQFFMPTLRGSTEGSKKRYVGAYRQEDQSLKLVFKG 648
            W+  L++E +L   LELE+E HF +F MPT+RG+ +GSKKRY G   QE  + ++VFKG
Sbjct: 578 WWQEHLQKE-RLTSALELEFETHFARFLMPTIRGTDQGSKKRYAGLI-QEGDAQRMVFKG 635

Query: 649 MEQVRSDWSPLAREVQAELYYRLFAKQDVLGYLKQIVDALQRGELDDRLIFSKRLRRNIE 708
           +E VR+DW+PLA++ Q  LY R+F  +    Y+++ + +L  GELD +L++ KRLRR + 
Sbjct: 636 LETVRTDWTPLAQQFQQTLYLRVFRNEPYQDYVRETIASLMAGELDAQLVYRKRLRRPLA 695

Query: 709 DYTAKSSPHVKAATLWCQ---RSGNDSHGKRGEKISYLMTQNGAEPVQHLLGKIDYQYYL 765
           +Y     PHV+AA L  +   R G     +    I Y+ T +G EPV +    +DY++YL
Sbjct: 696 EYQRNVPPHVRAARLADEENVRRGRAPQYQNRGTIKYVWTISGPEPVDYQHSHLDYEHYL 755

Query: 766 DKQIAPISDPILSILNTSFNNLVAKQMSL 794
            +Q+ P++D IL  ++  F  LV  Q+ L
Sbjct: 756 TRQLQPVADGILPFIDDDFATLVTGQLGL 784