Pairwise Alignments

Query, 795 a.a., DNA polymerase II (RefSeq) from Shewanella loihica PV-4

Subject, 783 a.a., DNA polymerase II from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  599 bits (1544), Expect = e-175
 Identities = 348/813 (42%), Positives = 486/813 (59%), Gaps = 50/813 (6%)

Query: 1   MSVKGRILTRHH----QGSELHYYLSTAEGPARVIVPNGERICFCRTQDELR----LLGD 52
           M+  G ILTRH     QG+E+ ++L+T  GP +V +   E + F       R    L G 
Sbjct: 1   MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQG- 59

Query: 53  NRESGIRSEALNLTTFQDEPVSALYFANNQSFRHLSRIATDKGISLYESELRAEQRYLIE 112
             E G R   L L  F  +PV  LY   ++   +  +   + G+++YE+++R  +RYL+E
Sbjct: 60  --EQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLME 117

Query: 113 RYIALDVEFIGRWQSQALDTPTLIAERARRSELDVNREVKLAVVSLDFECAMDGELFSVG 172
           R+I   V     W    +   T++  R +      +    L  VS+D E    GEL+ +G
Sbjct: 118 RFITSPV-----WVEGDMHNGTIVNARLKPHP---DYRPPLKWVSIDIETTRHGELYCIG 169

Query: 173 LYGQSASGEPYQQVIMVG------EACDSPPEYLSLVPNEAALIKSLLDWFKLNDPDIII 226
           L G        + V M+G       + D   EY++  P    L++ L  WF   DPD+II
Sbjct: 170 LEGCGQ-----RIVYMLGPENGDASSLDFELEYVASRPQ---LLEKLNAWFANYDPDVII 221

Query: 227 GWAVVTFDLALLYRRARALNIPLTLGRLGTQLSWRVDNKYRPETLILP--GRVVLDGIDW 284
           GW VV FDL +L + A    +PL LGR  ++L WR ++ ++         GR+++DGI+ 
Sbjct: 222 GWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWR-EHGFKNGVFFAQAKGRLIIDGIEA 280

Query: 285 LKAAFYQFDSFSLESVARELLGEGKAIHNVSHRAEEIATLFREDKAALAHYNITDCRLVW 344
           LK+AF+ F SFSLE+VA+ELLGEGK+I N   R +EI   F EDK ALA YN+ DC LV 
Sbjct: 281 LKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVT 340

Query: 345 EIFAKTDLLAFVMERSRLTGLELGRVGASVAAFNNLYLPHLHRAGYVAPSVPVSDGIESP 404
           +IF KT+++ F++ER+ + GL + R G SVAAF +LY P +HRAGYVAP++       SP
Sbjct: 341 QIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASP 400

Query: 405 GGYVMDSKPGLYQHILVLDFKSLYPSIIRTFLIDPKGLVEGLKAEANAGVKGVREGNDTV 464
           GGYVMDS+PGLY  +LVLD+KSLYPSIIRTFLIDP GLVEG+            +   + 
Sbjct: 401 GGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQP---------DPEHST 451

Query: 465 PGFLGAQFSRNSPILPELIASLSAKREEAKREANAPLSQAIKIIMNSLYGVLGSRGCVFH 524
            GFL A FSR    LPE++ ++   R+EAKR+ N PLSQA+KIIMN+ YGVLG+  C F 
Sbjct: 452 EGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFF 511

Query: 525 DARLASSITLRGHEIMKQTKQWIEALGLTVIYGDTDSTFVHISSPERVGDINAFARELVA 584
           D RLASSIT+RGH+IM+QTK  IEA G  VIYGDTDSTFV +       +     R LV 
Sbjct: 512 DPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQ 571

Query: 585 SINEKWRLKLKQEFQLECYLELEYERHFEQFFMPTLRGSTEGSKKRYVGAYRQEDQSLKL 644
            +N  W   L+++ +L   LELEYE HF +F MPT+RG+  GSKKRY G  ++ D+  ++
Sbjct: 572 HVNAWWAETLQKQ-RLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQ-RM 629

Query: 645 VFKGMEQVRSDWSPLAREVQAELYYRLFAKQDVLGYLKQIVDALQRGELDDRLIFSKRLR 704
           VFKG+E VR+DW+PLA++ Q ELY R+F  +    Y++Q +D L  GELD RL++ KRLR
Sbjct: 630 VFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRQTIDKLMAGELDARLVYRKRLR 689

Query: 705 RNIEDYTAKSSPHVKAATL---WCQRSGNDSHGKRGEKISYLMTQNGAEPVQHLLGKIDY 761
           R + +Y     PHV+AA L     Q+ G     +    I Y+ T NG EP+ +    +DY
Sbjct: 690 RPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDY 749

Query: 762 QYYLDKQIAPISDPILSILNTSFNNLVAKQMSL 794
           ++YL +Q+ P+++ IL  +  +F  L+  Q+ L
Sbjct: 750 EHYLTRQLQPVAEGILPFIEDNFATLMTGQLGL 782