Pairwise Alignments

Query, 380 a.a., nuclease SbcCD, D subunit (RefSeq) from Shewanella loihica PV-4

Subject, 400 a.a., Exonuclease SbcD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  145 bits (367), Expect = 1e-39
 Identities = 91/295 (30%), Positives = 144/295 (48%), Gaps = 17/295 (5%)

Query: 1   MKFIHTSDWHIGRQLHNQSLLDDQRHVLDQIVSLAKTHEVDALIVAGDIYDRSVPPANAV 60
           M+ +HTSDWH+G+  +++S   + +  LD ++  A+ H+VDA+IVAGDI+D   PP+ A 
Sbjct: 1   MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLETAQAHQVDAIIVAGDIFDTGSPPSYAR 60

Query: 61  ALLDEVLNEFIALGIDVIMIAGNHDGHERLGFAARQMQASGLHIIGPLAPKVSPIRLSSG 120
            L +  +      G  ++++AGNHD    L  +   +      +I         +    G
Sbjct: 61  ELYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDILAFLNTTVIASAGYAPRLLHRRDG 120

Query: 121 SGDAIFYPLPYAEPATVRQQLECEAS-SHEEAMVELLKQVQDHDSQ------------GL 167
           S  A+  P+P+  P   R  +  +A  S  E   +LL  + D+  Q             L
Sbjct: 121 SPGAVLCPIPFLRP---RDIITSQAGLSGSEKQQQLLHAIADYYQQQYQEACQLRGERKL 177

Query: 168 PKVVIGHCFLDGGSESDSERPLSIGGADKISPKHFAPFDYTALGHLHGPQ-YKGAEQVRY 226
           P +  GH    G S+SD+ R + IG  D    +HF P DY ALGH+H  Q   G E +RY
Sbjct: 178 PVIATGHLTTVGASKSDAVRDIYIGTLDAFPAQHFPPADYIALGHIHRAQCVGGTEHIRY 237

Query: 227 SGSILKYSFSEQHQNKSVTLVELNAGSPANMTLLPLSPLRDVRIIEGALADLLQQ 281
            GS +  SF E  ++K V LV    G   +   L +   + + +++G LA + +Q
Sbjct: 238 CGSPIALSFDECGKSKCVHLVTFEQGKWQSTESLAVPVTQPLAVLKGDLASITEQ 292