Pairwise Alignments

Query, 380 a.a., nuclease SbcCD, D subunit (RefSeq) from Shewanella loihica PV-4

Subject, 400 a.a., Nuclease SbcCD subunit D from Escherichia fergusonii Becca

 Score =  141 bits (355), Expect = 4e-38
 Identities = 94/302 (31%), Positives = 151/302 (50%), Gaps = 31/302 (10%)

Query: 1   MKFIHTSDWHIGRQLHNQSLLDDQRHVLDQIVSLAKTHEVDALIVAGDIYDRSVPPANAV 60
           M+ +HTSDWH+G+  +++S   + +  LD ++  A+ H+VDA+IVAGD++D   PP+ A 
Sbjct: 1   MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQAHQVDAIIVAGDVFDTGSPPSYAR 60

Query: 61  ALLDEVLNEFIALGIDVIMIAGNHD-------GHERLGFAARQMQASGLHIIGPLAPKVS 113
            L +  +      G  ++++AGNHD         + + F    + AS  H     AP++ 
Sbjct: 61  TLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGH-----APQIL 115

Query: 114 PIRLSSGSGDAIFYPLPYAEPATVRQQLECEASSHE-EAMVELLKQVQDH---------- 162
           P R   G+  A+  P+P+  P   R  +  +A  +  E    LL  + D+          
Sbjct: 116 PRR--DGTPGAVLCPIPFLRP---RDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACK 170

Query: 163 --DSQGLPKVVIGHCFLDGGSESDSERPLSIGGADKISPKHFAPFDYTALGHLHGPQ-YK 219
               Q LP +  GH    G S+SD+ R + IG  D    ++F P DY ALGH+H  Q   
Sbjct: 171 LRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIG 230

Query: 220 GAEQVRYSGSILKYSFSEQHQNKSVTLVELNAGSPANMTLLPLSPLRDVRIIEGALADLL 279
           G E VRY GS +  SF E  ++K V LV  + G   ++  L +   + + +++G LA + 
Sbjct: 231 GMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASIT 290

Query: 280 QQ 281
            Q
Sbjct: 291 AQ 292