Pairwise Alignments

Query, 1018 a.a., SMC domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 1047 a.a., exonuclease subunit SbcC from Escherichia coli ECRC62

 Score =  249 bits (635), Expect = 9e-70
 Identities = 298/1083 (27%), Positives = 468/1083 (43%), Gaps = 129/1083 (11%)

Query: 1    MRPLRLTMTAFGPFADEQIIDFAA--LGSNPLFLINGPTGAGKTTILDAICFALYGKTTG 58
            M+ L L +        E  IDF      SN LF I GPTGAGKTT+LDAIC ALY +T  
Sbjct: 1    MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR 60

Query: 59   DEREGTQMRCDMADEQRLTQVSFEFELGSTRYLIRRVPEQPRAKKSGEGVTLQKSEAQLS 118
                       M  +        EFE+    Y  R    Q RA+   +G  LQ    +L+
Sbjct: 61   LSNVSQSQNDLMTRDTAECLAEVEFEVKGEAY--RAFWSQNRARNQPDG-NLQVPRVELA 117

Query: 119  RVDTDGSETLLVAAKVSDATAQIEQLTGLDVDQFRQVMVLPQGKFRELLMADSKAREKIF 178
            R   DG    ++A KV D       LTGLD  +F + M+L QG+F   L A  K R ++ 
Sbjct: 118  RC-ADGK---ILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELL 173

Query: 179  SQLFQTHIYRRIEERLKQQAAGIRRDVEAMRNRRGGILEGAELASDQALIEEQALIAPEL 238
             +L  T IY +I   + +Q    R ++E ++ +  G+   A L  +Q     Q+L A   
Sbjct: 174  EELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGV---ALLTPEQV----QSLTASLQ 226

Query: 239  ELAQAHKQQAEQALLTANQNLDKGLKLQSDFNRLQALQSEGEGLKARQLEATLWQQRLQA 298
             L    KQ     LLTA Q   + L       RL  LQ E    +    +A   +++ Q 
Sbjct: 227  VLTDEEKQ-----LLTAQQQEQQSLNW---LTRLDELQQEASRRQQALQQALAEEEKAQP 278

Query: 299  AGRANSLSPLYRAMQ---SRLGEQRSASQHLDECQQIHASAEQALNQSQQAFEQLGALEQ 355
               A SL+   R ++    R+ E  +A  H  +  +   +  Q+    + +     A + 
Sbjct: 279  QLAALSLAQPARNLRPHWERIAEHSAALAHTRQQIEEVNTRLQSTMALRASIRHHAAKQS 338

Query: 356  EQLSQQQRLTQLEALAPQLEQLNQLSERLADGQAKMQAAEASGKQSAKQLDELNQARQEI 415
             +L QQQ+   L     + ++  Q +  LA  +A+     +  +   +   +L  A Q++
Sbjct: 339  AELQQQQQ--SLNTWLQEHDRFRQWNNELAGWRAQFSQQTSDREHLRQWQQQLTHAEQKL 396

Query: 416  VSRREI------------LKRDAEPQLALQQSLSDGRAQLKVFE-RWQQQGLEIAALEQK 462
             +   I            L + AE Q  L+Q L     Q+   + R  Q  + I  +  +
Sbjct: 397  NALAAITLTLTADEVATALAQHAE-QRPLRQHLVALHGQIVPQQKRLAQLMVTIQNVTLE 455

Query: 463  LTAAKTAGSELAEKHKQAIDAHKRLELSWHRGQAARLA------AELSPGEPCPVCGSLE 516
             T    A SE+ +++K+     +  ++     Q AR+       A+L  G+PCP+CGS  
Sbjct: 456  QTQRNAALSEMRQRYKEK--TQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPLCGSTS 513

Query: 517  HP--------EPAMGEFDLPSDE------------------ALAQAKQRESDALNLLHQA 550
            HP        EP + +  L + E                  AL +  QR+ +    L Q 
Sbjct: 514  HPAVEAYQALEPGVNQSRLLALENEVKKLGEEGAALRGQLDALTKQLQRDENEAQSLRQ- 572

Query: 551  RSEYKLLQQ-SLSNLQLSASLLQEELGEAAGLSFDEHQARLAELSDGFE---RAKAAQQS 606
              E  L QQ       L+ +L  ++  +    + DEH+ +L  LS   E   +  A  Q 
Sbjct: 573  -DEQALTQQWQAVTASLNITLQPQDDIQPWLDAQDEHERQLRLLSQRHELQGQIAAHNQQ 631

Query: 607  LAQLETQLERSEHQGRELQTALDEARAHYGKLAEQLASDKGQYQQISAAIPQGFSDVATL 666
            + Q + Q+E+ + Q   L TAL        +  E+  S     QQ + +     +++  L
Sbjct: 632  IIQYQQQIEQRQQQ---LLTALTGYALTLPQEDEE-ESWLATRQQEAQSWQHRQNELTAL 687

Query: 667  STAIADLTKTI------DELKARQQSVRAAHAKAEQDNAAAKASLEAASRRLGEVNALAE 720
               I  LT  +      DEL   +++V   + +   +   A   L +  + L + + LA 
Sbjct: 688  QNRIHQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLA---LHSQQQTLQQQDVLAA 744

Query: 721  QE----SLSFQQALATSEFESVAAFEQACLTEAEQAELSNQIKAFEQALITHQANLSQLQ 776
            Q        F  AL  S F+   AF  A + E    +L    +  E      Q  ++Q  
Sbjct: 745  QSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLVTQTA 804

Query: 777  EALAGCEA--PDMSALEQQKMDAEQVMQQALAQWQKVSARAAQLSQTQEQLK-------- 826
            E LA  +   PD  AL    +  EQ+ Q+     QK+        + ++QLK        
Sbjct: 805  ETLAQHQQHRPDGLALT---VTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADNRQQ 861

Query: 827  --ALDLKAGALEQQYAVVGTLADVANGNTGNKISLQRFVLSVLLDDVLLEASHRLQLMSK 884
               L  +   + QQ A  G L  +     G+K   ++F   + LD+++  A+ +L  +  
Sbjct: 862  QQTLLQQIAQMTQQVADWGYLNSLIGSKEGDKF--RKFAQGLTLDNLVHLANQQLTRLH- 918

Query: 885  GRYRLLRKEERAKGNKASGLELEVEDAYTAK-VRSVATLSGGESFMAALSMALGLSDVVQ 943
            GRY L RK   A       LE+EV D + A  VR   TLSGGESF+ +L++AL LSD+V 
Sbjct: 919  GRYLLQRKASEA-------LEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVS 971

Query: 944  AYAGGIKLDTLFIDEGFGSLDQDSLELAIRTLMDLQSAGRMVGVISHVTEMKEQIASRID 1003
                  ++D+LF+DEGFG+LD ++L+ A+  L  L ++G+ +GVISHV  MKE+I  +I 
Sbjct: 972  HKT---RIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIK 1028

Query: 1004 ILK 1006
            + K
Sbjct: 1029 VKK 1031