Pairwise Alignments
Query, 1018 a.a., SMC domain-containing protein (RefSeq) from Shewanella loihica PV-4
Subject, 1047 a.a., exonuclease subunit SbcC from Escherichia coli ECOR27
Score = 252 bits (644), Expect = 8e-71
Identities = 309/1089 (28%), Positives = 467/1089 (42%), Gaps = 141/1089 (12%)
Query: 1 MRPLRLTMTAFGPFADEQIIDFAA--LGSNPLFLINGPTGAGKTTILDAICFALYGKTTG 58
M+ L L + E IDF SN LF I GPTGAGKTT+LDAIC ALY +T
Sbjct: 1 MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR 60
Query: 59 DEREGTQMRCDMADEQRLTQVSFEFELGSTRYLIRRVPEQPRAKKSGEGVTLQKSEAQLS 118
M + EFE+ Y R Q RA+ +G LQ +L+
Sbjct: 61 LSNVSQSQNDLMTRDTAECLAEVEFEVKGEAY--RAFWSQNRARNQPDG-NLQVPRVELA 117
Query: 119 RVDTDGSETLLVAAKVSDATAQIEQLTGLDVDQFRQVMVLPQGKFRELLMADSKAREKIF 178
R DG ++A KV D LTGLD +F + M+L QG+F L A K R ++
Sbjct: 118 RC-ADGK---ILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELL 173
Query: 179 SQLFQTHIYRRIEERLKQQAAGIRRDVEAMRNRRGGILEGAELASDQALIEEQALIAPEL 238
+L T IY +I + +Q R ++E ++ + G+ A L +Q Q+L A
Sbjct: 174 EELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGV---ALLTPEQV----QSLTASLQ 226
Query: 239 ELAQAHKQQAEQALLTANQNLDKGLKLQSDFNRLQALQSEGEGLKARQLEATLWQQRLQA 298
L KQ LLTA Q + L RL LQ E + +A +++ Q
Sbjct: 227 VLTDEEKQ-----LLTAQQQEQQSLNW---LTRLDELQQEASRRQQALQQALAEEEKAQP 278
Query: 299 AGRANSLSPLYRAMQ---SRLGEQRSASQH-----------LDECQQIHASAEQ-ALNQS 343
A SL+ R ++ R+ E +A H L + AS A NQS
Sbjct: 279 QLAALSLAQPARNLRPHWERIAEHSAALAHTRQQIEEVNTRLQSTMALRASIRHHAANQS 338
Query: 344 ---QQAFEQLGALEQEQLSQQQRLTQLEALAPQLEQLNQLSERLADGQAKMQAAEASGKQ 400
QQ + L QE +Q +L Q Q Q S+R Q + Q A K
Sbjct: 339 AELQQQQQSLNTWLQEHDRFRQWNNELAGWRAQFSQ--QTSDREHLRQWQQQLTHAEQKL 396
Query: 401 SAKQLDELNQARQEIVSRREILKRDAEPQLALQQSLSDGRAQLKVFE-RWQQQGLEIAAL 459
+ L E+ S L + AE Q L+Q L Q+ + R Q + I +
Sbjct: 397 NTLAAITLTLTADEVASA---LAQHAE-QRPLRQRLVALHGQIVPQQKRLAQLQVAIQNV 452
Query: 460 EQKLTAAKTAGSELAEKHKQAIDAHKRLELSWHRGQAARLA------AELSPGEPCPVCG 513
Q+ T A +E+ +++K+ + ++ Q AR+ A+L G+PCP+CG
Sbjct: 453 TQEQTQRNAALNEMRQRYKEK--TQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPLCG 510
Query: 514 SLEHP--------EPAMGEFDLPSDE------------------ALAQAKQRESDALNLL 547
S HP EP + + L + E AL + QR+ + L
Sbjct: 511 STSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGAALRGQLDALTKQLQRDENEAQSL 570
Query: 548 HQARSEYKLLQQ-SLSNLQLSASLLQEELGEAAGLSFDEHQARLAELSDGFE---RAKAA 603
Q E L QQ L+ +L ++ + + DEH+ +L LS E + A
Sbjct: 571 RQ--DEQALTQQWQAVTASLNITLQPQDDIQPWLDAQDEHERQLQLLSQRHELQGQIAAH 628
Query: 604 QQSLAQLETQLERSEHQGRELQTALDEARAHYGKLAEQLASDKGQY---QQISAAIPQGF 660
Q + Q + Q+E+ + Q L TAL A Y Q ++ QQ + + Q
Sbjct: 629 NQQIIQYQQQIEQRQQQ---LLTAL----AGYALTLPQEDEEESWLATRQQEAQSWQQRQ 681
Query: 661 SDVATLSTAIADLTKTI------DELKARQQSVRAAHAKAEQDNAAAKASLEAASRRLGE 714
+++ L I LT + D+L +++V + + + A L + + L +
Sbjct: 682 NELTALQNRIQQLTPILETLPQSDDLPHSEETVALDNWRQVHEQCLA---LHSQQQTLQQ 738
Query: 715 VNALAEQE----SLSFQQALATSEFESVAAFEQACLTEAEQAELSNQIKAFEQALITHQA 770
+ LA Q F AL S F+ AF A + E +L + E Q
Sbjct: 739 QDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQT 798
Query: 771 NLSQLQEALAGCEA--PDMSALEQQKMDAEQVMQQALAQWQKVSARAAQLSQTQEQLK-- 826
++Q E LA + PD AL + EQ+ Q+ QK+ + ++QLK
Sbjct: 799 LVTQTAETLAQHQQHRPDGLALT---VTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQD 855
Query: 827 --------ALDLKAGALEQQYAVVGTLADVANGNTGNKISLQRFVLSVLLDDVLLEASHR 878
L + + QQ G L + G+K ++F + LD+++ A+ +
Sbjct: 856 ADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKF--RKFAQGLTLDNLVHLANQQ 913
Query: 879 LQLMSKGRYRLLRKEERAKGNKASGLELEVEDAYTAK-VRSVATLSGGESFMAALSMALG 937
L + GRY L RK A LE+EV D + A VR TLSGGESF+ +L++AL
Sbjct: 914 LTRLH-GRYLLQRKASEA-------LEVEVVDTWQADAVRDTRTLSGGESFLVSLALALA 965
Query: 938 LSDVVQAYAGGIKLDTLFIDEGFGSLDQDSLELAIRTLMDLQSAGRMVGVISHVTEMKEQ 997
LSD+V ++D+LF+DEGFG+LD ++L+ A+ L L ++G+ +GVISHV MKE+
Sbjct: 966 LSDLVSHKT---RIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022
Query: 998 IASRIDILK 1006
I +I + K
Sbjct: 1023 IPVQIKVKK 1031