Pairwise Alignments

Query, 693 a.a., TPR repeat-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 579 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  248 bits (632), Expect = 8e-70
 Identities = 172/552 (31%), Positives = 273/552 (49%), Gaps = 37/552 (6%)

Query: 3   HFLRPEWLLALIPLALLLWLRKRQRHQASSWNRYI-APHLAKVLVSGQASNKKQHLGLIA 61
           H+ RP WLL L  L  LLW    ++ +A  W   + A   A +L  G     K    L+ 
Sbjct: 7   HWFRPGWLLLLPLLGWLLWHLWHRQKRAGRWQMILPAAFHAVLLRGGNGRESKSPWVLLG 66

Query: 62  FIWLVSVLALSGPALTKQQLPVFEANLGRVIVMDMSLSMYATDLAPNRLTQAKFKATDLI 121
             WL++VLAL GP+  + +    + +   V++++++  M ATD  PNRL QA+ K  D++
Sbjct: 67  IAWLLAVLALLGPSWQRVEQSSQKPSDPLVVLLELTPEMLATDSPPNRLEQARRKLYDVL 126

Query: 122 KSLKEGETGLVAYAGDAFTISPLTRDKSTLLNLLPTLSPEIMPVLGSNLPAALDQAKQLL 181
           ++  + +T +V YAG A T+ PL+ D +T  NLL  L P IMP  G     A+++A  LL
Sbjct: 127 QARTDAQTAIVVYAGSAHTLVPLSDDLATSRNLLDALRPSIMPEAGHRADLAVEKALGLL 186

Query: 182 VQGGHLKGEIILLADGVNPDQIGEAKSILDDTQY-RLSIIAMGTNQGAAIRLPDGQLMRD 240
            QGG  +G ++L+   ++  +    + +L + Q   LSI+ +G+ +G  +    G+ ++D
Sbjct: 187 KQGGLGQGRLLLIGSSLSKQERQGIRLLLQNAQSPTLSILGIGSREGTPVTQESGEFLKD 246

Query: 241 QSDQVVVSQTDLSQLNSLIGNSGGKLFAYRADGKDLESL-----TQSLSQESDAKTSDRQ 295
           +   ++V + D   L +     GG+  A R D KDL  L      Q+L  +      D  
Sbjct: 247 EQGAILVPRLDSPTLKAFASEMGGRYRAARLDDKDLRQLGVLDPPQTLRNDGQLLRLD-- 304

Query: 296 GEAWQDLGPYLAL-LLLLPALLSFRHAFAALACLVILAPSPEAQAASWQHPFSTDDQRAM 354
              W D G +L L LLLL A    R     L  L++ AP P + A S Q  +   DQ+  
Sbjct: 305 --TWADQGYWLLLPLLLLAACAGRRGWLFCLPLLLLSAPQP-SYAFSLQDLWLRPDQQGQ 361

Query: 355 QAYQAQDFQGAAEQFTSPQWKAASLYKNGDYQEALKLFEQDDSASGLFNQGNSLMQLNDL 414
              + +    AAE F  PQWK  +LY+ G+Y EA+KLF + + A   +N+GN+L +  +L
Sbjct: 362 YLLKKKRPAEAAEHFEDPQWKGVALYEAGNYAEAIKLFAEGNDAYSHYNRGNALARSGEL 421

Query: 415 DKAIERYQQALKKDPQLTQAEQNLELAEQLKQQQQASQDQGQSDQKKSEQNQSDQDQSNQ 474
           + AI+ Y+QAL+  P L  A +N  L E L Q++              ++ +  Q   N+
Sbjct: 422 EAAIDAYEQALEAQPDLQPALKNKALVEALVQER--------------DEPEPTQPAKNE 467

Query: 475 DSNKQDKSQQDGAGQNQGQQQGQGDQQSGQGSRGQQSQGQNGQQEDEQGSNQ--QGSDKQ 532
           D    D++ Q G    Q  Q G   Q +  G    Q QG++G  + + GS     G++  
Sbjct: 468 D----DETTQPG----QTAQPGASGQNATGGEPSSQGQGESGTDDTQAGSPSPPPGNEVP 519

Query: 533 GSDKQSASQESP 544
           GS+       +P
Sbjct: 520 GSELGDEQTTTP 531



 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 35/146 (23%), Positives = 56/146 (38%), Gaps = 28/146 (19%)

Query: 541 QESPEQETPEQQASAEQEASQDGQSQNQQTGAANDAQMSADPAKDAKNQMDANANQSDAG 600
           QE  E E  +   + + E +Q GQ+   Q GA+       +P+                 
Sbjct: 453 QERDEPEPTQPAKNEDDETTQPGQTA--QPGASGQNATGGEPSSQ--------------- 495

Query: 601 QQMGQGQQPQDEQESTQAQAANMTQGKPGEGDEQGE-----PVAAATNAIAPEDLPPEMQ 655
              GQG+   D+   TQA + +   G    G E G+     P     NA    +    ++
Sbjct: 496 ---GQGESGTDD---TQAGSPSPPPGNEVPGSELGDEQTTTPPLRPDNASLDGEHRQALE 549

Query: 656 RALTGVIDDPQVLLRNKMQLEYQKRR 681
           + L  + D+P  LLR K   E Q+ +
Sbjct: 550 QWLQEIPDNPGELLRRKFWYEQQQHQ 575