Pairwise Alignments

Query, 309 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

Subject, 442 a.a., POSSIBLE CONSERVED MEMBRANE PROTEIN from Pseudomonas fluorescens GW456-L13

 Score = 61.2 bits (147), Expect = 4e-14
 Identities = 54/249 (21%), Positives = 105/249 (42%), Gaps = 24/249 (9%)

Query: 4   NALPLFADGVSLNQKELLACQNLARALPERKSKARAALAGHRASSIKGRGMEFAEVRHYQ 63
           +A  ++ D   L + +LLA  N    L  R+ + R            G G+EF ++R ++
Sbjct: 162 DATRVYPDFARLYEGQLLAVDNWLSQLGVRQKQRR------------GLGLEFHQLREFR 209

Query: 64  AGDDVRTIDWRVTARTGKAHTKLFVEERERPVLLLLDLSHSLYFGSSLMLQSVQAAHLAA 123
            GD +R IDW+ TAR      + + +ER++ ++ +LD    +      +     A +   
Sbjct: 210 EGDSLRQIDWKATARQRTPIAREYQDERDQQIIFMLDCGRHMRSQDDELSHFDHALNACL 269

Query: 124 TLGWAAVGHGDRLGALIASEAEHLELKPRSRQTGMLALISAIEQIHQQQLHQLNQPVKQP 183
            L + A+  GD +G    +  +   L P    + +  L++ +        + LN   +  
Sbjct: 270 LLSYVALRQGDAVGLSTFASEQPRYLAPVKGTSHLNTLLNTV--------YDLNSTQRSA 321

Query: 184 EHIFKACQRLRRIAKPGSLIWIISDGSHFGPQCLGPLSELKR-HCDIGAFL---ITDPLR 239
           ++   A Q L R  +   ++ + +       + L  +  L R H  + A L   + D LR
Sbjct: 322 DYQAAATQLLARQKRRALVVLVTNLREEDDDELLPAIHRLSRQHQVLVASLREDVLDTLR 381

Query: 240 QGTLKLPPQ 248
           Q  ++  P+
Sbjct: 382 QSPVQTLPE 390