Pairwise Alignments

Query, 669 a.a., DNA ligase, NAD-dependent (RefSeq) from Shewanella loihica PV-4

Subject, 703 a.a., DNA ligase (NAD(+)) (EC 6.5.1.2) from Sphingobium sp. HT1-2

 Score =  539 bits (1389), Expect = e-157
 Identities = 321/689 (46%), Positives = 414/689 (60%), Gaps = 40/689 (5%)

Query: 6   DEIKQLTDELNQHNYRYYVDDAPSIPDAEYDRLMRRLQELEAEHPELALADSPTQRVGGE 65
           + + +L  E+ +HN  Y+  DAP I DA+YD L+R    LEA  P L  ADSP  +VG  
Sbjct: 14  NRLMRLAREVAKHNRLYHDQDAPEISDADYDALIRENNALEAAFPHLIRADSPNAQVGAT 73

Query: 66  ALSKFNQVTHLKPMLSLDNVFSEEEFNAFYKRVGDKLP---DTP-AFCCEPKLDGLAVSI 121
           A S   +V H   M+SLDN F++E+   F  RV   L    D P A   EPK+DGL+ S+
Sbjct: 74  ATSALKKVPHAVRMMSLDNGFADEDIAEFAARVRRFLALAEDAPVAMTAEPKIDGLSCSL 133

Query: 122 LYRDGVFERAATRGDGTVGEDITENVRTIKSVPLRLRGSGFPPLLEVRGEVFMPKAAFEA 181
            Y  G    AATRGDGT GED+T NVRTI  +P RL G   P L EVRGEV+M KA F A
Sbjct: 134 RYEQGELVLAATRGDGTTGEDVTANVRTIADIPQRLTGEVIPDLFEVRGEVYMAKADFVA 193

Query: 182 VNDKARAKGE-----KLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPETWPLA 236
           +N +   + E     + F NPRNAAAGSLRQ D+ +TASR L F A+  G         A
Sbjct: 194 LNQRLLDEAEDADKARQFANPRNAAAGSLRQKDASVTASRPLRFLAHGWGAHSALP---A 250

Query: 237 ASHFEQLVQLKEWGCPVSSEVKVCAD-IPSVLAYYQDILTRRSELAYEIDGVVLKVNDIA 295
            +    +  +  WG PVS ++ VC D I ++LA+Y+ I   R++L ++IDGVV KV+ + 
Sbjct: 251 DTQLGVMQAIAGWGLPVS-DMLVCVDSIDAILAHYRAIERARADLPFDIDGVVYKVDRLD 309

Query: 296 QQQTLGFVAKAPRWATAYKFPAQEEITQLEGVDFQVGRTGAVTPVARLQPVFVGGVTVSN 355
            QQ LGFVAKAPRWA A+KFPA+   T LE +D QVGRTG +TPV RL PV VGGV VSN
Sbjct: 310 WQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRLTPVTVGGVVVSN 369

Query: 356 ATLHNADEIARLGVMIGDSVIIRRAGDVIPQVVAVVPEKRPSDAQAIQFPPQCPVCGSDV 415
            TLHNADEI RLGV  GD V+++RAGDVIPQVV  +   R    +   FP  CPVCGS+ 
Sbjct: 370 VTLHNADEIERLGVRPGDRVVVQRAGDVIPQVVDNL--TRDEVREPFPFPTHCPVCGSEA 427

Query: 416 ERVEGEAVARCTGGLVCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVASPADLF 475
            R E E   RCTGGL+C AQR E ++HF SR ALDI+G+G+K +E+ +D   +  PAD+F
Sbjct: 428 VREEEEVDYRCTGGLICAAQRFERLRHFVSRAALDIEGLGEKTIEEFLDLGWIKEPADIF 487

Query: 476 KLTASAITMLDRMGM--KSATNLVNALEAAKQTTFARFLYSLGIREVGEATAANLANYFK 533
           +L   A  +L R G   KS  NL+ A+EA +    A+ L+ LGIR VG  TA +L   + 
Sbjct: 488 RLRTHAGELLGREGWKEKSVDNLLAAIEAKRAPDAAKLLFGLGIRHVGAVTARDLLKRYT 547

Query: 534 TLEHLKQADAETF--------------------MKVDDVGVIVAQHLVHFFEQPHNLEVI 573
           TL  L+    E                      + V++VG  V   L  FF +PHN+E  
Sbjct: 548 TLPALRTLADEIIALRDQAYETQAKKDKAIAEHIGVENVGAAVGHALADFFHEPHNVEAW 607

Query: 574 DGLLQAGVHWPDIEEVAEEALSLKGQTWVLTGTLTQLNRNDAKAKLQALGAKVAGSVSKN 633
           D LL + V  PD   V   A ++ G+  V TG L  ++R++AKA+ + LGAK AGSVS  
Sbjct: 608 DDLL-SEVSPPDY-VVETTASAVTGKIVVFTGKLETMSRDEAKAQAERLGAKAAGSVSAK 665

Query: 634 TDCLVAGEAAGSKLTKAQELGVKVIDEAE 662
           TD +VAG  AGSKL +A  LG++VI E +
Sbjct: 666 TDLVVAGPGAGSKLKQATALGIEVISEQD 694