Pairwise Alignments

Query, 226 a.a., exonuclease, RNase T and DNA polymerase III (RefSeq) from Shewanella loihica PV-4

Subject, 248 a.a., DNA polymerase III subunit epsilon from Pseudomonas simiae WCS417

 Score = 45.8 bits (107), Expect = 7e-10
 Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 18/187 (9%)

Query: 44  LAIDLEMTGLNASFD-QILSIGVVPIRQGQLILSEAQHKLVQIEGSVGQSAT-IHGILDT 101
           + +D E TG+  +   +I+ IG V +  G+ +     H  +Q +    + A  +HGI D 
Sbjct: 6   VVLDTETTGMPVTDGHRIIEIGCVEL-MGRRLTGRHFHVYLQPDRDSDEGAIGVHGITDE 64

Query: 102 HLDAALTPEQAMAWFLSVSEGMVLVAHHAPLDLAFLQSGLQACLGEKPR------LLAID 155
            L       +    F     G  L+ H+A  D+ F+ +   A +G+  R         +D
Sbjct: 65  FLKGKPRFAEVADEFFEFINGAQLIIHNAAFDVGFINNEF-ALMGQTDRADISQHCSILD 123

Query: 156 TLLLEKQRLLRQQEHLQEGCLRLGRSRARYGLPVYAAHNALIDALACGELLLAQVAAMGG 215
           TL++ ++R   Q+  L   C R G   +   L     H AL+D+    ++ L      GG
Sbjct: 124 TLMMARERHPGQRNSLDALCKRYGVDNSGREL-----HGALLDSEILADVYLTMT---GG 175

Query: 216 ATKVKIA 222
            T + +A
Sbjct: 176 QTSLSLA 182