Pairwise Alignments

Query, 226 a.a., exonuclease, RNase T and DNA polymerase III (RefSeq) from Shewanella loihica PV-4

Subject, 239 a.a., DNA polymerase III subunit epsilon (RefSeq) from Shewanella loihica PV-4

 Score =  121 bits (303), Expect = 1e-32
 Identities = 80/200 (40%), Positives = 108/200 (54%), Gaps = 12/200 (6%)

Query: 22  GLKAYQQALMPVIDKPFAEAELLAIDLEMTGLNASFDQILSIGVVPIRQGQLILSEAQHK 81
           GL+ Y    +P  D P AE ELLA+D E TGLN   D I+SIG VP    ++ L+ AQH 
Sbjct: 28  GLRQYYLGGLPDPDTPLAEVELLAMDFETTGLNVDKDDIVSIGTVPFTLRRIFLNRAQHW 87

Query: 82  LVQ-IEGSVGQSATIHGILDTHLDAALTPEQAMAW--FLSVSEGMVLVAHHAPLDLAFLQ 138
            V+  E    +S  IHGI  TH D    P+ +  +   L    G ++V H+  ++  FL+
Sbjct: 88  TVRPREQLAEESVIIHGI--THSDILDAPDLSAIFEQVLEQMAGKIMVVHYQAIERLFLE 145

Query: 139 SGLQACLGEKPRLLAIDTLLLEKQRLLRQQEHL-------QEGCLRLGRSRARYGLPVYA 191
             L   + +      IDT+ LE +   RQ   L       + G +RLG+SR+RYGLP Y 
Sbjct: 146 RALIRRIHQGIEFPLIDTMALESEIQKRQHGGLLQRLKGDKPGSVRLGQSRSRYGLPSYP 205

Query: 192 AHNALIDALACGELLLAQVA 211
            HNAL DA+A  ELL AQ+A
Sbjct: 206 PHNALTDAIATAELLQAQIA 225