Pairwise Alignments

Query, 1113 a.a., DNA polymerase III, subunits gamma and tau (RefSeq) from Shewanella loihica PV-4

Subject, 642 a.a., DNA polymerase III subunits gamma and tau (EC 2.7.7.7) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  451 bits (1159), Expect = e-130
 Identities = 241/460 (52%), Positives = 316/460 (68%), Gaps = 8/460 (1%)

Query: 1   MSYQVLARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAK 60
           MSYQVLARKWRP TF  VVGQ HVL AL N LS  R+HHAYLF+GTRGVGKTS+ARL AK
Sbjct: 1   MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60

Query: 61  GLNCEQGVTATPCGQCASCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120
           GLNCE G+TATPCG C +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF
Sbjct: 61  GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120

Query: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTL 180
           KVYLIDEVHMLSR SFNALLKTLEEPP HVKFLLATTDPQ+LPVT+LSRCLQF+LK+L +
Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180

Query: 181 DEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAFGAGQVRLTQVQTM 240
           ++I  QL HIL +E + ++  A++LL++AA+GS+RDALSLTDQAIA G GQV    V  M
Sbjct: 181 EQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQAVSAM 240

Query: 241 LGTIDEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPHEVLRSLLELLHQITLTQFAPS 300
           LGT+D+   + L++A+ D + + +M +  +  + G +   +L  +L LLH+I + Q +P+
Sbjct: 241 LGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIAMVQLSPA 300

Query: 301 A--AQLSQYAEQIKAFAKQLRPEQVQLYYQLLLNGRQDLPHAPDPKSGLEMALLRAIAFV 358
           A  + ++   ++++  A+ + P  +QLYYQ LL GR++LP APD + G+EM LLRA+AF 
Sbjct: 301 ALGSDMAAIEQRMRELARTVPPGDLQLYYQTLLIGRKELPWAPDRRMGVEMTLLRALAFH 360

Query: 359 PEAPVQRWMGEAGSEILLPDTPLPELGKGEDVAPTSARPDGTVKPVKPAESVLNSQAEAE 418
           P  P+     E   +   P  P   +   +   P++  P  +  P+ PA +   SQ  A 
Sbjct: 361 PRMPLPE--PETPRQSFAPVAPTAVMTPPQLQQPSAPAPQTSPAPL-PAST---SQVLAA 414

Query: 419 VEDKAEVEEKAKVEASNEASVAMLSDAQASTAEQTNKLSD 458
                  +   K + S  A+ +       S  E+   +S+
Sbjct: 415 RNQLQRAQGVTKTKKSEPAAASRARPVNNSALERLASVSE 454



 Score = 65.9 bits (159), Expect = 1e-14
 Identities = 39/118 (33%), Positives = 61/118 (51%)

Query: 968  WYRLMSALEIGGRVRQLAVNAVCKAFSEPLPLVLKPNQKHLAAPGAISQLEDALSKALGG 1027
            W   +S L +   V Q+A+NA  +     + L L+  Q+HL + GA  +L  ALS   G 
Sbjct: 522  WAAQVSQLSLPKLVEQVALNAWKEQNGNAVCLHLRSTQRHLNSSGAQQKLAQALSDLTGT 581

Query: 1028 SCQVAFSVGVEPERETPLEIRQRFHRELLEQAHQGLLQDENIQWLTQVMQAEMEPDSL 1085
            + ++       P   TPLE RQ  + E L QA + ++ D NIQ L +   AE++ +S+
Sbjct: 582  TVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESI 639