Pairwise Alignments

Query, 1113 a.a., DNA polymerase III, subunits gamma and tau (RefSeq) from Shewanella loihica PV-4

Subject, 670 a.a., DNA polymerase III subunit gamma/tau from Dickeya dianthicola ME23

 Score =  457 bits (1175), Expect = e-132
 Identities = 274/590 (46%), Positives = 361/590 (61%), Gaps = 19/590 (3%)

Query: 1   MSYQVLARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAK 60
           MSYQVLARKWRP TF  VVGQ HVL AL N LS  R+HHAYLF+GTRGVGKT++ARL AK
Sbjct: 1   MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTTIARLLAK 60

Query: 61  GLNCEQGVTATPCGQCASCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120
           GLNCE G+TATPCGQC +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF
Sbjct: 61  GLNCETGITATPCGQCDTCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120

Query: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTL 180
           KVYLIDEVHMLSR SFNALLKTLEEPP HVKFLLATTDPQ+LPVT+LSRCLQF+LK+L  
Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFHLKALDA 180

Query: 181 DEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAFGAGQVRLTQVQTM 240
           ++I   L  +L QEQ+  +  A++LLA+AA+GS+RDALSLTDQAIA G GQV    V  M
Sbjct: 181 EQIRRHLQQVLEQEQLAAEPRALQLLARAADGSLRDALSLTDQAIAMGQGQVTAAAVSQM 240

Query: 241 LGTIDEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPHEVLRSLLELLHQITLTQFAPS 300
           LGT+D+   + L++AL  GD   +M + G   + G D   +L   L LLH+I + Q  PS
Sbjct: 241 LGTLDDEQPLALIEALVKGDGAGVMALMGQAAARGVDWEALLVETLTLLHRIAMLQLLPS 300

Query: 301 AA--QLSQYAEQIKAFAKQLRPEQVQLYYQLLLNGRQDLPHAPDPKSGLEMALLRAIAFV 358
           A   + +Q A +++  A+ + P +VQLYYQ LL GR++LP+AP+ + G+EM LLRA+AF 
Sbjct: 301 ALGDEYNQVAPRLRELARVIPPAEVQLYYQTLLVGRKELPYAPERRMGVEMTLLRALAFH 360

Query: 359 PEAPVQRWMG-EAGSEILLPDTPLPELGKGEDVAPTSARPDGTVKPVKPAESVLNSQAEA 417
           P   +   +   A S +     PLP         P S RP  +  PV   +  L+    A
Sbjct: 361 PSQTIAEPVPVSAPSAVPAAGAPLP---ADPSRVPPSVRP--SAMPVVSGDEALSRHVPA 415

Query: 418 EVED--KAEVEEKAKVEASNEASVA--MLSDAQASTAEQTNKLSDTDGPFEANLVAVDLV 473
              +   A   +    +A+ +   A   L + Q +T  +  + + +      N     L 
Sbjct: 416 TGSEPPAAPAPDSNLPDATAQLLQARSQLLNRQGNTPTKKAEPAASGKARPVNSALERLA 475

Query: 474 EADSTEKDALEEDEGALDLFAEQQLILSQAQSKGHSPELSAELSTNHSPEPSPEPESSPE 533
                 +  +     A +   +Q+    +AQ K    E +A ++T  +   + E E +PE
Sbjct: 476 SVTERGQQQMAAKAVAQEEQKKQEAYRWRAQKKAEQVE-TAPVTTPKALRSALEYEKTPE 534

Query: 534 PSPQETSSANKSPVSEASAESKVDASTSAATAQGGEAALSTEPKMPAESV 583
            + Q    A    +   +  +++D  T     Q  + AL+   +MP E V
Sbjct: 535 LAAQLAEEA----IERDAWAAEIDRLTLPKLVQ--QLALNAFKEMPEEGV 578



 Score = 66.2 bits (160), Expect = 8e-15
 Identities = 62/253 (24%), Positives = 111/253 (43%), Gaps = 24/253 (9%)

Query: 841  PEPSLQAVTAPSDEVPNLAGQVDTQSESHARADAAAQIEQGLDELSLEDQSLDDQSLDDQ 900
            P+ + Q + A S ++ N  G   T+    A +  A  +   L+ L+         S+ ++
Sbjct: 431  PDATAQLLQARS-QLLNRQGNTPTKKAEPAASGKARPVNSALERLA---------SVTER 480

Query: 901  SLDDQSSEDLNSDDQGSNESGAFGNHPVQSPAAQEVSAPSAVTEPVSQTTQ-------VA 953
                 +++ +  ++Q   E+  +     Q  A Q  +AP    + +    +        A
Sbjct: 481  GQQQMAAKAVAQEEQKKQEAYRWR---AQKKAEQVETAPVTTPKALRSALEYEKTPELAA 537

Query: 954  FVADEITGHDTDLKWYRLMSALEIGGRVRQLAVNAVCKAFSEP-LPLVLKPNQKHLAAPG 1012
             +A+E    D    W   +  L +   V+QLA+NA  +   E  + L L+ +Q+HL +  
Sbjct: 538  QLAEEAIERDA---WAAEIDRLTLPKLVQQLALNAFKEMPEEGVIHLHLRTSQRHLNSAA 594

Query: 1013 AISQLEDALSKALGGSCQVAFSVGVEPERETPLEIRQRFHRELLEQAHQGLLQDENIQWL 1072
            A   L +AL+   G    +  +    P   TPLE RQ  + E L QA Q ++ D NIQ L
Sbjct: 595  AQKMLSEALAAHYGRPISLTVTEDDTPAVRTPLEWRQAIYEEKLAQARQSIMADNNIQTL 654

Query: 1073 TQVMQAEMEPDSL 1085
             +   AE++ +S+
Sbjct: 655  RRFFDAELDEESI 667