Pairwise Alignments

Query, 641 a.a., helicase c2 (RefSeq) from Shewanella loihica PV-4

Subject, 636 a.a., conserved protein with nucleoside triphosphate hydrolase domain (NCBI) from Escherichia coli BW25113

 Score =  533 bits (1372), Expect = e-155
 Identities = 295/628 (46%), Positives = 400/628 (63%), Gaps = 5/628 (0%)

Query: 13  FAPDGSLSRHIKGYSCRVQQQTMATRVSETLQKGDNLVVEAGTGVGKTYAYLVPALLSGK 72
           FAPDG L++ I G+  R  Q+ MA  V++ ++KG  LVVEAGTG GKTYAYL PAL + K
Sbjct: 5   FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64

Query: 73  QVIVSTGSKNLQEQLFFKDLPALLNILGIRPKVALLKGRSNYLCQYLMEKQ-LSGVEVND 131
           +VI+STGSK LQ+QL+ +DLP +   L     VALLKGRSNYLC   +E+Q L+G ++  
Sbjct: 65  KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL-P 123

Query: 132 GKILDDLLRIDQWASQTVDGDIGSLYAVPENSPAIPLVVSSKESCIGKACDHYEACFTRK 191
            +IL D++ +  W++QTVDGDI +  +V E+S A PLV S+ ++C+G  C  Y+ CF  K
Sbjct: 124 VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVK 183

Query: 192 ARAKALDAKIIVVNHHLFFADRILKETGFAELLPDSDVVIFDEAHLLPDIAVTYFGQQLS 251
           AR KA+DA ++VVNHHLF AD ++KE+GF EL+P++DV+IFDEAH LPDIA  YFGQ LS
Sbjct: 184 ARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLS 243

Query: 252 IKSLIRLLERFNELYRTQMADSPQIGAMTARCHTQLLHWQGLLFATEER-DWRRLIGDKA 310
            + L+ L +     YRT++ D+ Q+     R       ++  L     R + R L+ +  
Sbjct: 244 SRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQ 303

Query: 311 LMEASWALVSELTAYRTMLLGYLGRNEAFDDGVEKIDGLLSKLTVFIQCDNPDSAYSIDY 370
           +  A   L   L     +    LGR+   D   E+     ++L    + + P  +Y  + 
Sbjct: 304 IQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYEC 363

Query: 371 GYQHLTLRISPIKVAKECQSLFSPDV-SWIFTSATLQINRDLSLFTKAMGLEKANTSILD 429
             +H TL ++P+ VA + + L +    SWIFTSATL +N DL  FT  +G+E+A + +L 
Sbjct: 364 TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLP 423

Query: 430 SPFDYRRQSLFCVPRHLASVTSQERAARQLVEVAVKAINAAKGRTFMLFTSHRMLNLVAV 489
           SPFDY RQ+L CV R+L   T+Q  +ARQL  +    I A  GR FML TSH M+  +A 
Sbjct: 424 SPFDYSRQALLCVLRNLPQ-TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482

Query: 490 MLQGRIDYPLLVQGQAGKQTLLKKYRQLGNAVLLGTGAFWEGVDVRGKLLSCVIIDKLPF 549
             +  +  P+L+QG+  K  LL+++   GNA+L+ T +FWEGVDVRG  LS VIIDKLPF
Sbjct: 483 QFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPF 542

Query: 550 VSPDDNLYKARADGVQREGKDPFMTLSLPQAVIALNQGVGRLIRDEKDRGVLILCDNRIV 609
            SPDD L KAR +  +  G DPF  + LP AVI L QGVGRLIRD  DRGVL++CDNR+V
Sbjct: 543 TSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602

Query: 610 NRPYGQAFINSLPPMHRTRDLDSAVHFL 637
            RPYG  F+ SLPP  RTRD+  AV FL
Sbjct: 603 MRPYGATFLASLPPAPRTRDIARAVRFL 630