Pairwise Alignments

Query, 641 a.a., helicase c2 (RefSeq) from Shewanella loihica PV-4

Subject, 725 a.a., Rad3-related DNA helicases from Enterobacter asburiae PDN3

 Score =  151 bits (382), Expect = 9e-41
 Identities = 181/689 (26%), Positives = 288/689 (41%), Gaps = 101/689 (14%)

Query: 18  SLSRHIKGYSCRVQQQTMATRVSETL--QKGDNLVVEAGTGVGKTYAYLVPALL----SG 71
           +L + I  +  R  Q+ M   V++TL    G +L +EA TGVGKT +YL+P +       
Sbjct: 17  ALQQQIPDFIPRAPQRQMIADVAKTLAGDDGRHLAIEAPTGVGKTLSYLIPGIAIAREED 76

Query: 72  KQVIVSTGSKNLQEQLFFKDLPALLNIL-GIRPKVALLKGRSNYLCQYLMEKQLSGVEVN 130
           K ++VST +  LQ+Q+F KDLP L  I+  +R   A   GR  Y+C   +   L+  E N
Sbjct: 77  KTLVVSTANVALQDQIFSKDLPLLRKIIPDLRFTAAF--GRGRYVCPRNLAA-LASSEPN 133

Query: 131 DGKIL---DDLLRIDQWASQTVDGDIGSLY-------AVPENSPAIP-----LVVSSKES 175
              +L   DD L  +  A Q     + +              S AI       + + K S
Sbjct: 134 QQDLLAFLDDELTPNNKAEQEQCAKLKAELDGYKWDGLRDHTSQAISDDLWRRLSTDKAS 193

Query: 176 CIGKACDHYEACFTRKARAKALDAKIIVVNHHLFFADRILKETGFAELLPDSDVVIFDEA 235
           C+ + C +Y  C    AR +  +A+++V NH L  A  +  E    E  P + +++ DE 
Sbjct: 194 CLNRNCHYYRECPFFVARREIQEAEVVVANHALVMA-ALESEAVLPE--PKNLLLVLDEG 250

Query: 236 HLLPDIA-----------VTYFGQQLSI--KSLIRLLERFNELYRTQMADSPQIGAMTAR 282
           H LPD+A             +F  QL +  K +   +E+F       +A   ++      
Sbjct: 251 HHLPDVARDALEMSAEITAPWFRLQLDLFCKLVATCMEQFRPKTTPPLAVPERLSDHCEE 310

Query: 283 CHTQLLHWQGLLF----ATEERDWRRLIGD-----KALMEASWALVSELTAYRTMLLGYL 333
            +  +     +L     AT+E + R  +G+      A+ +     + +L     M L  L
Sbjct: 311 VYGLIASLNNILNLYLPATQEAEHRFAMGELPEEVMAICQHLAKHLEKLRGLAEMFLNDL 370

Query: 334 GRNEAFDD---------------GVEKIDGLLSKLTVFIQCDNPD----SAYSIDYGYQH 374
                  D               G+ +    L +L    Q         +   +  G  H
Sbjct: 371 SEKTGSHDVVRLHRVLLQMNRALGMFEAQSKLWRLASMAQASGAPVTKWATRDVRDGQVH 430

Query: 375 LTLRISPIKVAKECQSLFSPDVSWIF-TSATLQINRDLSLFTKAMGL-EKANTSI--LDS 430
           L      I+VA + + L    V  +  TSATL+     S   +  GL EKA      LDS
Sbjct: 431 LFFHCVGIRVADQLEKLIWRSVPHVVVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDS 490

Query: 431 PFDYRRQSLFCVPR------------HLASVTSQERAARQLVEVAVKAINAAKGRTFMLF 478
           PF++  Q    +PR            H+A + +  R   +  +     +  A GR    F
Sbjct: 491 PFNHCEQGKLVIPRMKFEPLIDNEEQHIAEMAAYFREQVESKKYPGMLVLFASGRAMQRF 550

Query: 479 TSHRM-LNLVAVMLQGRIDYPLLVQGQAGKQTLLKKYRQL----GNAVLLGTGAFWEGVD 533
             H   L L+           LLVQG   +  L++ +R+       +VL+G  +F EG+D
Sbjct: 551 LEHVTDLRLL-----------LLVQGDQPRYRLVETHRKRIDNGERSVLVGLQSFAEGLD 599

Query: 534 VRGKLLSCVIIDKLPFVSPDDNLYKARADGVQREGKDPFMTLSLPQAVIALNQGVGRLIR 593
           ++G  L+ V I K+ F   D  +     + ++   + PF   SLP A   L Q VGRLIR
Sbjct: 600 LKGDYLTQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPAASFNLIQQVGRLIR 659

Query: 594 DEKDRGVLILCDNRIVNRPYGQAFINSLP 622
                G +++ D R++ + YGQ  +N+LP
Sbjct: 660 SHGCWGEVVIYDKRLLTKNYGQRLLNALP 688