Pairwise Alignments

Query, 242 a.a., DNA polymerase III, epsilon subunit (RefSeq) from Shewanella loihica PV-4

Subject, 235 a.a., DNA polymerase III epsilon subunit (EC 2.7.7.7) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  202 bits (515), Expect = 4e-57
 Identities = 115/236 (48%), Positives = 155/236 (65%), Gaps = 10/236 (4%)

Query: 9   RQVILDTETTGMNQGAGAVYFGHRIIEIGCVEVINRKLTGRHFHEYINPMQAIDEEAITV 68
           RQ++LDTETTG++   G      RIIEIGCVE++NRKLTG + H Y+NP +   E+A+ V
Sbjct: 2   RQIVLDTETTGLSAENG-----DRIIEIGCVELLNRKLTGNNLHFYLNPERDSHEDALKV 56

Query: 69  HGITNEFVADKPVFAQIAPAFLEFIDGAEIVAHNANFDVSFMDHEFSLLTPRGPKTTDIC 128
           HGI+NEF+ DKP FA I+   L+++  AE++ HNA FD+SF++ E   L    P TT + 
Sbjct: 57  HGISNEFLRDKPKFAAISDQLLDYLRDAEVIIHNAPFDISFLNKEMERL-GHPPITTILG 115

Query: 129 QVLDSLEIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLIMTGGQTKF 188
           QV DSL +AK + PG++N LDALC R G+DNS R LHGALLDAE+LADVY+ MT GQ   
Sbjct: 116 QVTDSLVMAKEMFPGKRNGLDALCDRLGVDNSGRTLHGALLDAELLADVYINMTRGQDAL 175

Query: 189 ELS-NEKPGQESGGIIRLANNRPSLKVIGASADELNMHEQRLDLVEKS--GQCIWR 241
            +   + PG E G    L  +R  L V+ A+  E   HE  L  ++K+  G+ +WR
Sbjct: 176 IMDIGDAPG-EDGQTEALDLSRFELPVLLANEQEAQAHEGVLAELDKASKGKTLWR 230