Pairwise Alignments

Query, 443 a.a., recombination factor protein RarA (RefSeq) from Shewanella loihica PV-4

Subject, 447 a.a., FIG065221: Holliday junction DNA helicase from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  574 bits (1479), Expect = e-168
 Identities = 290/447 (64%), Positives = 356/447 (79%), Gaps = 6/447 (1%)

Query: 1   MSSLSFDFAPD-FRPLAARMRPETLSQYIGQDHLLGEGKPLRQALEAGRAHSMMFWGPPG 59
           +S+LS DF+ + F+PLAARMRPE L+QYIGQ HLL  GKPL +A+EAG  HSM+ WGPPG
Sbjct: 1   VSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPG 60

Query: 60  TGKTTLAELVAHYANAHVERISAVTSGVKEIRAAIEHAKSVAQSRGQRTLLFVDEVHRFN 119
           TGKTTLAE++A YA+A VERISAVTSGVKEIR AIE A+   ++ G+RT+LFVDEVHRFN
Sbjct: 61  TGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQ-NRNAGRRTILFVDEVHRFN 119

Query: 120 KSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLQDEEIIKIVRQALE 179
           KSQQDAFLP IEDGT+ FIGATTENPSFE+N+ALLSRARVYL+K L  ++I +++ QA++
Sbjct: 120 KSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLDQAMQ 179

Query: 180 DGERGLGKRQLKMPNEVAGKLASLCDGDARKALNLIELMSDMLP--DGGE--FNAQMLIE 235
           D  RG G + + +P+E    +A L +GDAR+ALN +E+M+DM    D G+      +L E
Sbjct: 180 DKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVLLPALLTE 239

Query: 236 VAGQQLAGFDKNGDQYYDLISAVHKSIRGSAPDAALYWYCRMLEGGCDPLYVARRLLAIA 295
           +AG++ A FD  GD++YDLISA+HKS+RGSAPDAALYWY R++  G DPLYVARR LAIA
Sbjct: 240 IAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIA 299

Query: 296 SEDIGNADPVAMSVAVNAWECFHRVGPAEGERAIAQAVVYLACAPKSNAVYTAFKAARQL 355
           SED+GNADP AM VA+ AW+CF RVGPAEGERAIAQA+VYLACAPKSNAVYTAFKAA   
Sbjct: 300 SEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALAD 359

Query: 356 ARETGSQPVPNHLRNAPTQLMADIGLGEGYRYAHDEPNHYASGECYFPEQLAGTQFYYPS 415
           ARE     VP HLRNAPT+LM ++G G+ YRYAHDEPN YA+GE YFP ++A T++Y+P+
Sbjct: 360 ARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEVYFPPEIAQTRYYHPT 419

Query: 416 EHGFEKRIKTKLATLAEMDRASEVKRY 442
             G E +I  KLA LAE D+ S  KRY
Sbjct: 420 NRGLEGKIGEKLAWLAEQDQNSPTKRY 446