Pairwise Alignments

Query, 443 a.a., recombination factor protein RarA (RefSeq) from Shewanella loihica PV-4

Subject, 447 a.a., recombination protein (NCBI) from Escherichia coli BW25113

 Score =  582 bits (1499), Expect = e-170
 Identities = 293/447 (65%), Positives = 358/447 (80%), Gaps = 6/447 (1%)

Query: 1   MSSLSFDFAPD-FRPLAARMRPETLSQYIGQDHLLGEGKPLRQALEAGRAHSMMFWGPPG 59
           MS+LS DF+ + F+PLAARMRPE L+QYIGQ HLL  GKPL +A+EAG  HSM+ WGPPG
Sbjct: 1   MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPG 60

Query: 60  TGKTTLAELVAHYANAHVERISAVTSGVKEIRAAIEHAKSVAQSRGQRTLLFVDEVHRFN 119
           TGKTTLAE++A YANA VERISAVTSGVKEIR AIE A+   ++ G+RT+LFVDEVHRFN
Sbjct: 61  TGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQ-NRNAGRRTILFVDEVHRFN 119

Query: 120 KSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLQDEEIIKIVRQALE 179
           KSQQDAFLP IEDGT+ FIGATTENPSFE+N+ALLSRARVYL+K L  E+I +++ QA+E
Sbjct: 120 KSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAME 179

Query: 180 DGERGLGKRQLKMPNEVAGKLASLCDGDARKALNLIELMSDM--LPDGGE--FNAQMLIE 235
           D  RG G + + +P+E    +A L +GDAR+ALN +E+M+DM  + D G+     ++L E
Sbjct: 180 DKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTE 239

Query: 236 VAGQQLAGFDKNGDQYYDLISAVHKSIRGSAPDAALYWYCRMLEGGCDPLYVARRLLAIA 295
           +AG++ A FD  GD++YDLISA+HKS+RGSAPDAALYWY R++  G DPLYVARR LAIA
Sbjct: 240 IAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIA 299

Query: 296 SEDIGNADPVAMSVAVNAWECFHRVGPAEGERAIAQAVVYLACAPKSNAVYTAFKAARQL 355
           SED+GNADP AM VA+ AW+CF RVGPAEGERAIAQA+VYLACAPKSNAVYTAFKAA   
Sbjct: 300 SEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALAD 359

Query: 356 ARETGSQPVPNHLRNAPTQLMADIGLGEGYRYAHDEPNHYASGECYFPEQLAGTQFYYPS 415
           ARE     VP HLRNAPT+LM ++G G+ YRYAHDE N YA+GE YFP ++A T++Y+P+
Sbjct: 360 ARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPT 419

Query: 416 EHGFEKRIKTKLATLAEMDRASEVKRY 442
             G E +I  KLA LAE D+ S +KRY
Sbjct: 420 NRGLEGKIGEKLAWLAEQDQNSPIKRY 446