Pairwise Alignments

Query, 395 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

Subject, 380 a.a., Multidrug efflux system, membrane fusion component from Pseudomonas sp. S08-1

 Score = 73.6 bits (179), Expect = 9e-18
 Identities = 88/362 (24%), Positives = 147/362 (40%), Gaps = 53/362 (14%)

Query: 35  PVVDNTPVVAVEIIDKEPMTFTVNSYGIVNAKYETDLVSQVTGEIVYLSDAFVRGGFVKK 94
           P    TP V +  +  +P T T    G  +A    ++  QV G  +     F  G  VK 
Sbjct: 30  PPAAQTPQVGIVTLQAQPFTLTAELPGRTSAYRIAEVRPQVDG--ILQKRLFKEGSEVKV 87

Query: 95  GQILAKIDPSDYEAALIDAKATVASAK------ATLVQEKAYGKVAAEEWKRIENGTPTE 148
           GQ L +IDP+ Y+A+   A+AT+AS +      A LV ++A  K A +E K         
Sbjct: 88  GQQLYQIDPAVYQASYKSAQATLASTQSLAERYADLVSDQAVSKQAYDEAK--------- 138

Query: 149 LSLRKPQLAQEVARLNSSEAGLKRATRNLERTVIKAPYDALIESRHIGLGSYVSAGTQVG 208
                       A   S+EA L+RA  +L  T + AP    +    +  G+ V+ G Q  
Sbjct: 139 ------------AAQLSAEAALERARIDLRYTKVLAPISGRVGRSAVTEGALVNNG-QAA 185

Query: 209 KLLSTEKAE---IRLPLPDKEIRYLDNKGLGAQVMVKGNFA---------GENTSWKGQI 256
            L + ++ +   + +  P K++  L  +    Q+   G  A         G   + +G +
Sbjct: 186 ALATIQQLDPIYVDVTQPTKDLLRLRREMASGQLAKAGANAAKVRLKLEDGSEYAHEGTL 245

Query: 257 VRSEGVIDNRSRMTYLVAEVIDPYGLKDNKQPLRYGSYITAQIHGSQAQDVTT-----IA 311
             SE  +D  +    L A   +P      +  L  G ++ AQ+     Q         I 
Sbjct: 246 EFSEVSVDEGTGSVTLRAVFPNP------EHDLLPGMFVHAQLSSGVRQQAILAPQQGIT 299

Query: 312 RHLVVNDKVAIMTPENTLAFKSVDILRQQGTQVVIGDGLDDGMRLITSALDYPIEGMKLA 371
           R L       ++  EN +  + ++  R  G + ++  GL+ G +LIT  L +   G ++ 
Sbjct: 300 RDLKGQATALVVNAENKVELRQLEADRTVGDRWLVTKGLNPGDKLITEGLQFVRPGAEVQ 359

Query: 372 LA 373
            A
Sbjct: 360 TA 361