Pairwise Alignments

Query, 395 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

Subject, 433 a.a., Multidrug resistance protein MdtA from Pseudomonas sp. RS175

 Score = 74.3 bits (181), Expect = 6e-18
 Identities = 84/331 (25%), Positives = 146/331 (44%), Gaps = 29/331 (8%)

Query: 61  GIVNAKYETDLVSQVTGEIVYLSDAFVRGGFVKKGQILAKIDPSDYEAALIDAKATVASA 120
           G V A    ++ S+V+GE+V +  AF  G  VK G +LA+IDP  Y+ AL+ A+ T    
Sbjct: 86  GTVTALNTINVRSRVSGELVKI--AFEEGQMVKAGDLLAEIDPRPYQNALLQAEGT---- 139

Query: 121 KATLVQEKAYGKVAAEEWKRIENGTPTELSLRKPQL-------AQEVARLNSSEAGLKRA 173
              L+Q +A  K A  + +R   G   E S+ K  L        Q    + +++A +  A
Sbjct: 140 ---LLQNQAQLKNAQVDLERYR-GLYAEDSIAKQTLDTAAALVGQYQGTVKTNQAAVNDA 195

Query: 174 TRNLERTVIKAPYDALIESRHIGLGSYVSAG--TQVGKLLSTEKAEIRLPLPDKEI-RYL 230
             NLE T I+AP    +  R + +G+ V+A   T +  +  T+   +   LP+  +   L
Sbjct: 196 KLNLEFTRIRAPISGRVGLRQLDIGNLVAANDTTALAVITQTQPISVVFTLPESNLDTVL 255

Query: 231 DNKGLGAQVMVKGNFAGENTSWKGQIVRSEGVIDNRSRMTYLVAEVIDPYGLKDNKQPLR 290
                GA++ V+    G+       +++S   +DN+   T    +    Y  +D  Q L 
Sbjct: 256 ARYRSGAKLPVEAWDRGDVKLQASGVLQS---LDNQIDTTTGTLKFKARYDNRD--QSLF 310

Query: 291 YGSYITAQIHGSQAQDVT---TIARHLVVNDK-VAIMTPENTLAFKSVDILRQQGTQVVI 346
              ++  ++     + V    T A     N   V  +  +  +  K++ I    G+  V+
Sbjct: 311 PNQFVNVRLLADTLKGVVLAPTAAIQFGTNGTFVYALDGDRKVTIKTLKIGPSDGSNTVV 370

Query: 347 GDGLDDGMRLITSALDYPIEGMKLALAEDKQ 377
            +GL  G R++    D   EG ++ +  D Q
Sbjct: 371 TEGLAAGERVVLEGTDRLKEGSEVEVVNDSQ 401