Pairwise Alignments

Query, 395 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

Subject, 366 a.a., Multidrug resistance protein MdtA from Pseudomonas sp. DMC3

 Score = 66.2 bits (160), Expect = 1e-15
 Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 16/227 (7%)

Query: 47  IIDKEPMTFTVNSY-GIVNAKYETDLVSQVTGEIVYLSDAFV-RGGFVKKGQILAKIDPS 104
           ++  EP    + SY G V A+YE DL  ++ G++   S   V  G  VK  Q LA++DP 
Sbjct: 36  VVQPEPSAQAMESYPGEVRARYEPDLAFRIGGKV---SRRLVDEGQRVKADQPLAELDPQ 92

Query: 105 DYEAALIDAKATVASAKATLVQEKAYGKVAAEEWKRIENGTPTELSL---RKPQLAQEVA 161
           D    L   +A VA+A+A L   +A      + +K + +      S     +       A
Sbjct: 93  DVRLQLEATRAQVAAAEANLNLVRA----ERDRYKTLMDRQMVSRSAYDNAENLYRSGEA 148

Query: 162 RLNSSEAGLKRATRNLERTVIKAPYDALIESRHIGLGSYVSAGTQVGKLLSTEKAEIRLP 221
           RL   +A    +T      V++AP D ++  R + +G  V+AG  V  L +  + E+ + 
Sbjct: 149 RLKQIKAEFNVSTNQASYAVLRAPQDGVVAKRSVEVGQVVAAGQTVFTLATDGEREVLIS 208

Query: 222 LPDKEIRYLDNKGLGAQVMVKGNFAGENTSWKGQIVRSEGVIDNRSR 268
           LP++         +G  V V+  +A +N  + GQI       D RSR
Sbjct: 209 LPEQSFGRFK---VGQPVTVE-LWAQQNQRFAGQIRELSPSADPRSR 251