Pairwise Alignments

Query, 395 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

Subject, 405 a.a., MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit from Erwinia amylovora T8

 Score = 82.0 bits (201), Expect = 3e-20
 Identities = 80/335 (23%), Positives = 156/335 (46%), Gaps = 19/335 (5%)

Query: 41  PVVAVEIIDKEPMTFTVNSYGIVNAKYETDLVSQVTGEIVYLSDAFVRGGFVKKGQILAK 100
           PV A E + +    + ++  G V A     L S+V G++V L   F  G  V  GQ+LA+
Sbjct: 61  PVQAAEALRQNVPQY-LSGLGTVTAANTVTLRSRVDGDLVALH--FNEGQEVAAGQLLAE 117

Query: 101 IDPSDYEAALIDAKATVASAKATLVQEKAYGKVAAEEWKRIENGTPTELSLRKPQLAQEV 160
           IDP  YE AL+ A+  +A  +ATL   +       E+  + +  +  EL  ++ ++++ +
Sbjct: 118 IDPRPYEVALMQAEGQLAKDRATLTNARR-DLARYEKLAQTQLVSAQELDTQRARVSETL 176

Query: 161 ARLNSSEAGLKRATRNLERTVIKAPYDALIESRHIGLGSYVSAGTQVG--KLLSTEKAEI 218
             + + E  +  A  NL  + + AP    +  + + +G+YVS+G   G   +  T   ++
Sbjct: 177 GTIKADEGSVASARLNLTYSRVTAPIAGRVGLKQVDVGNYVSSGDANGIVVIAQTHPIDL 236

Query: 219 RLPLPDKEIRYLDNKGLGAQVMVKG-NFAGENTSWKGQIVRSEGVIDNRSRMTYLVAEVI 277
              LP+ +I  + +     ++ V+  +   +N   +G ++  +  ID+ +    L A   
Sbjct: 237 VFSLPESDIASVLSAQKNGKLPVEAWDRNNKNLLTRGTLLSMDNQIDSTTGTVKLKARF- 295

Query: 278 DPYGLKDNKQPLRY-GSYITAQIHGSQAQDVTTI-ARHLVVNDK---VAIMTPENTLAFK 332
                 DN+    +   ++ A++     +D   I A  L + ++   V ++  ++T++ K
Sbjct: 296 ------DNQDDRLFPNQFVNARLKIGTLEDAIVIPAAALQMGNESHFVWVINGDSTVSKK 349

Query: 333 SVDILRQQGTQVVIGDGLDDGMRLITSALDYPIEG 367
            V    Q   QVVI  GL  G +++T  +D   +G
Sbjct: 350 IVASGLQGSGQVVISAGLQAGEKVVTDGIDRLTDG 384