Pairwise Alignments

Query, 555 a.a., 30S ribosomal protein S1 (RefSeq) from Shewanella loihica PV-4

Subject, 774 a.a., transcription accessory protein from Pseudomonas simiae WCS417

 Score = 67.8 bits (164), Expect = 2e-15
 Identities = 33/76 (43%), Positives = 53/76 (69%), Gaps = 1/76 (1%)

Query: 186 LENLQEGQAVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEINVK 244
           L++L+ G  ++G+V N+T++GAFVD+G   DGL+HI+ ++ K +K P E V  GD + VK
Sbjct: 643 LKDLELGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVK 702

Query: 245 VLKYDRERTRVSLGLK 260
           V++ D  R RV L ++
Sbjct: 703 VMEVDIPRKRVGLSMR 718



 Score = 52.4 bits (124), Expect = 7e-11
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 280 LTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI-HPSKVVNLGDEVEVLVLDIDEE 338
           L G VTN+T++G FV+I    +GLVH+S +  + K I  P + V  GD V+V V+++D  
Sbjct: 652 LEGVVTNVTNFGAFVDIGVHQDGLVHISAL--SEKFIKDPREAVKAGDVVKVKVMEVDIP 709

Query: 339 RRRISLGLKQCKT 351
           R+R+ L ++   T
Sbjct: 710 RKRVGLSMRMSDT 722



 Score = 48.1 bits (113), Expect = 1e-09
 Identities = 27/84 (32%), Positives = 42/84 (50%)

Query: 445 LADKKKGAIVTGTVTAVDAKGVTIELAETVEGYLRVSDISRERIEDASTVYSVGDTVESK 504
           L D + G I+ G VT V   G  +++    +G + +S +S + I+D       GD V+ K
Sbjct: 643 LKDLELGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVK 702

Query: 505 FMGVDRKNRSISLSIRAKDEADEK 528
            M VD   + + LS+R  D   EK
Sbjct: 703 VMEVDIPRKRVGLSMRMSDTPGEK 726



 Score = 42.4 bits (98), Expect = 7e-08
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 9/73 (12%)

Query: 369 GKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEEAVSD----YKKGDEISAVVLSVDP 424
           G + ++T+FG F+ +    DGLVH+S +S     E+ + D     K GD +   V+ VD 
Sbjct: 654 GVVTNVTNFGAFVDIGVHQDGLVHISALS-----EKFIKDPREAVKAGDVVKVKVMEVDI 708

Query: 425 ERERISLGVKQTE 437
            R+R+ L ++ ++
Sbjct: 709 PRKRVGLSMRMSD 721