Pairwise Alignments

Query, 555 a.a., 30S ribosomal protein S1 (RefSeq) from Shewanella loihica PV-4

Subject, 561 a.a., 30S ribosomal protein S1 from Pseudomonas simiae WCS417

 Score =  796 bits (2057), Expect = 0.0
 Identities = 401/543 (73%), Positives = 459/543 (84%), Gaps = 2/543 (0%)

Query: 1   MTESFADLFEQSLQQLEFRPGSIVRGTVVSI--QNGMVLVDAGLKSESPIPADQFKNAQG 58
           M+ESFA+LFE+SL+ L  + GSI+ G +V I  Q   V V AGLKSE+ IP +QF N  G
Sbjct: 1   MSESFAELFEESLKTLNLQAGSIITGVIVDIDYQARWVTVHAGLKSEALIPLEQFYNDAG 60

Query: 59  VLEIAVGDEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGVINGKVKG 118
            L I VGDEV VALDSVEDGFGET+LSREKAKR E WIVLE A+   E V GVINGKVKG
Sbjct: 61  DLTINVGDEVHVALDSVEDGFGETKLSREKAKRAECWIVLEAAFAAEEVVKGVINGKVKG 120

Query: 119 GFTVELNGIRAFLPGSLVDVRPVRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESES 178
           GFTV++NGIRAFLPGSLVDVRPVRDT HLE KELEFKVIKLDQKRNNVVVSRR+V+E+E+
Sbjct: 121 GFTVDVNGIRAFLPGSLVDVRPVRDTTHLEGKELEFKVIKLDQKRNNVVVSRRSVLEAEN 180

Query: 179 SAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG 238
           SAER+ALLE+LQEGQ VKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR+KHPSEIVNVG
Sbjct: 181 SAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVNVG 240

Query: 239 DEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTKLTGRVTNLTDYGCFVEIEE 298
           DEI+VKVLKYDRER RVSLGLKQLGEDPW+ I  RYPE+T++T RVTNLTDYGCF E+EE
Sbjct: 241 DEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTARVTNLTDYGCFAELEE 300

Query: 299 GVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFA 358
           GVEGLVHVSEMDWTNKNIHPSKVV +GDEVEV+VLDIDEERRRISLG+KQCK+NPW+DF+
Sbjct: 301 GVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFS 360

Query: 359 ERYAKGDKVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEEAVSDYKKGDEISAV 418
            ++ KGDK++G IKSITDFGIFIGLDGGIDGLVHLSDISWN  GEEAV  +KKGDE+  V
Sbjct: 361 GQFNKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTV 420

Query: 419 VLSVDPERERISLGVKQTEDDPFNAYLADKKKGAIVTGTVTAVDAKGVTIELAETVEGYL 478
           +LSVDPERERISLG+KQ E DPF+ Y+ +  KGAIV GTV  VDAKG  I LA+ +E  L
Sbjct: 421 ILSVDPERERISLGIKQLESDPFSEYVQENDKGAIVKGTVKEVDAKGAIIVLADDIEATL 480

Query: 479 RVSDISRERIEDASTVYSVGDTVESKFMGVDRKNRSISLSIRAKDEADEKEAMANLNKQD 538
           + S+ISR+R+EDA  V   G  VE+K + VDRK+R I LSI++KDE +EKEA+ +L    
Sbjct: 481 KASEISRDRVEDARNVLKEGQEVEAKIISVDRKSRVIQLSIKSKDEVEEKEAIQSLKSAP 540

Query: 539 DVA 541
           + A
Sbjct: 541 EAA 543