Pairwise Alignments

Query, 555 a.a., 30S ribosomal protein S1 (RefSeq) from Shewanella loihica PV-4

Subject, 773 a.a., Protein YhgF from Escherichia coli ECRC62

 Score = 67.8 bits (164), Expect = 1e-15
 Identities = 35/82 (42%), Positives = 56/82 (68%), Gaps = 2/82 (2%)

Query: 186 LENLQEGQAVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEINVK 244
           + +LQ G  ++G V N+T++GAFVD+G   DGL+HI+ ++ K V+ P  +V  GD + VK
Sbjct: 645 MNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVK 704

Query: 245 VLKYDRERTRVSLGLKQLGEDP 266
           VL+ D +R R++L ++ L E P
Sbjct: 705 VLEVDLQRKRIALTMR-LDEQP 725



 Score = 57.0 bits (136), Expect = 3e-12
 Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 280 LTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIH-PSKVVNLGDEVEVLVLDIDEE 338
           L G VTN+T++G FV+I    +GLVH+S +  +NK +  P  VV  GD V+V VL++D +
Sbjct: 654 LEGAVTNVTNFGAFVDIGVHQDGLVHISSL--SNKFVEDPHTVVKAGDIVKVKVLEVDLQ 711

Query: 339 RRRISLGLK 347
           R+RI+L ++
Sbjct: 712 RKRIALTMR 720



 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 447 DKKKGAIVTGTVTAVDAKGVTIELAETVEGYLRVSDISRERIEDASTVYSVGDTVESKFM 506
           D + G I+ G VT V   G  +++    +G + +S +S + +ED  TV   GD V+ K +
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706

Query: 507 GVDRKNRSISLSIRAKDEADEKEA 530
            VD + + I+L++R  ++  E  A
Sbjct: 707 EVDLQRKRIALTMRLDEQPGETNA 730



 Score = 48.5 bits (114), Expect = 9e-10
 Identities = 63/290 (21%), Positives = 125/290 (43%), Gaps = 29/290 (10%)

Query: 155 KVIKLDQKRNNVVVSRRAVIESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGV 214
           +++K+D K   V   +  V +++ + + DA++E+        G+  N         + G+
Sbjct: 456 ELVKIDPKSIGVGQYQHDVSQTQLARKLDAVVEDCVNAV---GVDLNTASVPLLTRVAGL 512

Query: 215 DGLLHITDMAWK----RVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEI 270
             ++    +AW+    + ++  +++ V   +  K  +      R++ G      D  L+ 
Sbjct: 513 TRMMAQNIVAWRDENGQFQNRQQLLKVS-RLGPKAFEQCAGFLRINHG------DNPLDA 565

Query: 271 SKRYPENTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEV 330
           S  +PE   +  R+   T      ++      L ++   D+T++      V ++  E+E 
Sbjct: 566 STVHPEAYPVVERILAATQQA-LKDLMGNSSELRNLKASDFTDEKFGVPTVTDIIKELEK 624

Query: 331 LVLDIDEERRRISLGLKQCKTNPWDDFAERY---AKGDKVTGKIKSITDFGIFIGLDGGI 387
              D   E           KT  + D  E       G  + G + ++T+FG F+ +    
Sbjct: 625 PGRDPRPE----------FKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQ 674

Query: 388 DGLVHLSDISWNGTGEEAVSDYKKGDEISAVVLSVDPERERISLGVKQTE 437
           DGLVH+S +S N   E+  +  K GD +   VL VD +R+RI+L ++  E
Sbjct: 675 DGLVHISSLS-NKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDE 723



 Score = 25.8 bits (55), Expect = 0.007
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 2   TESFADLFEQSLQQLEFRPGSIVRGTVVSIQNGMVLVDAGLKSESPIPADQFKN 55
           T  FAD  E      + +PG I+ G V ++ N    VD G+  +  +      N
Sbjct: 635 TAQFADGVET---MNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSN 685