Pairwise Alignments

Query, 389 a.a., putative AcnD-accessory protein PrpF (RefSeq) from Shewanella loihica PV-4

Subject, 359 a.a., putative isomerase from Pseudomonas putida KT2440

 Score =  179 bits (454), Expect = 1e-49
 Identities = 138/384 (35%), Positives = 192/384 (50%), Gaps = 37/384 (9%)

Query: 5   KIPATYMRGGTSKGVFFALKDLPLNAQQPGPARDALLLRVIGSPDPYGKQTDGMGGATSS 64
           +IP   MRGGTSKG FF   DLP N  +    RD LL+ ++GS   +  + DG+GG +  
Sbjct: 3   RIPCVLMRGGTSKGPFFHAWDLPANVVE----RDELLINLMGSG--HELEIDGIGGGSPQ 56

Query: 65  TSKTVILDKSQRDDHDVDYLFGQVAIDKPFVDWSGNCGNLTAAVGAFAITQGLVDSAKIP 124
           TSK  I+  S   D DVDYLF QV + +  VD + NCGN+  AVG FAI QGLV      
Sbjct: 57  TSKVAIISPSLHADADVDYLFVQVMVAQRRVDTAPNCGNMLCAVGPFAIEQGLVKG---- 112

Query: 125 DNGIAVVKIWQANINKTIIAHVPMVDGEVQELGDFELDGVTFPAAEVLVEFVDPADGE-G 183
             G  +V+I   N    + + V    G V+  G   +DGV   AA V + F+D    + G
Sbjct: 113 QEGKTLVRIRNLNTGTFVNSLVETPGGIVRYEGRTAIDGVPGTAAPVHLTFLDAVGSKTG 172

Query: 184 DMFPTGNLVDKLEVPGEPVFDATFINAGIPTIFLKAEQLGYEGTELQEAINGDAAALERF 243
            +FPTG   D ++  G PV   T I+  +P + ++A QLG  G+E    ++ ++A LER 
Sbjct: 173 KLFPTGKAQDVID--GVPV---TCIDMAMPMMVVEASQLGVSGSETPAQLDANSALLERL 227

Query: 244 ETIRAHGALQMGLIQSLDEAAGRQHTPKIAFVAPAKAYTSSSGKQIAAEEIDLHVRALSM 303
           E +R    L+ G    L + +G    PK   V+  + Y  +           L VR    
Sbjct: 228 EALR----LKAGKAMGLGDVSG-MVIPKPVLVSKPR-YDGT-----------LQVRYFMP 270

Query: 304 GKLHHAMMGTAAVAIGTAASIPGTLVNQAAGGQARE--SVRFGHPSGTLKVGAKASEQEG 361
              H A+  T AV + TA   PGT++    G  A++   VR  HPSG + V    S  EG
Sbjct: 271 HNCHRALAITGAVGLATACVSPGTVIADLLGEGAQQLAQVRLEHPSGGIDVALTRSGAEG 330

Query: 362 RWQVEKVSMSRSARVLMQGWVCVP 385
             Q  + S+ R+AR L  G+V  P
Sbjct: 331 --QTIQASVVRTARRLFSGFVYAP 352