Pairwise Alignments

Query, 1295 a.a., ATP-dependent helicase HrpA (RefSeq) from Shewanella loihica PV-4

Subject, 1303 a.a., ATP-dependent helicase HrpA from Pseudomonas simiae WCS417

 Score = 1214 bits (3140), Expect = 0.0
 Identities = 639/1297 (49%), Positives = 876/1297 (67%), Gaps = 33/1297 (2%)

Query: 8    LSHAFLNQCFQADASRIKRRLHRLKKQADGEQKDEALAQLEEQAIAAAAKVESRRQNRPE 67
            L HA L     AD  R++R+L  L+K+ D    +E LAQ   +  A+ A+V +RR + P 
Sbjct: 15   LDHAML-----ADRHRLRRQLLELRKKPD----EEKLAQWVARMQASCAQVTARRASLPV 65

Query: 68   ISYPDALPVSQKRGEIAEAIANNQVVIVAGETGSGKTTQLPKICLELGLGTRGLIGHTQP 127
            I Y D+LP++ KR EI EA+  +QV+I+AGETGSGKTTQLPKICLE+G G  GLIGHTQP
Sbjct: 66   IRYDDSLPIAAKRDEIKEALNKHQVLIIAGETGSGKTTQLPKICLEIGRGQFGLIGHTQP 125

Query: 128  RRLAARSVATRVAEELNSPLGEVVGFKVRFADAIKPTSYIKLMTDGILLAELSSDKYLDQ 187
            RR+AARSVA+RVAEEL +PLG +VG++VRF D     + IKLMTDGILLAE  +D+YL++
Sbjct: 126  RRIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQNDRYLER 185

Query: 188  YDTIIIDEAHERSLNIDFILGYLKSVLKRRPDLKVIITSATIDVERFSKHFNNAPVIEVS 247
            YDTII+DEAHERSLNIDF+LGYLK++L RRPDLKVIITSATID+ERFSKHF++AP++EVS
Sbjct: 186  YDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAPIVEVS 245

Query: 248  GRTYPVETRYRPLVGEQDE-------DLDLTDGIFAAVEELMA------EGPGDILIFLN 294
            GRT+PV+T YRPL  EQDE       DL +   I A ++E+ A        PGD+L+FL 
Sbjct: 246  GRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDVLVFLP 305

Query: 295  GEREIRDLADQLNKQQYRDTEVLPLYARLSYGEQSKVFKSHRGRRIVLATNVAETSLTVP 354
            GEREIRD A+ L K Q + TE+LPLYARLS  EQ ++F+SH GRR+VLATNVAETSLTVP
Sbjct: 306  GEREIRDAAEVLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAETSLTVP 365

Query: 355  GIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVAPGICIRLYDEADFN 414
            GI+YVID GTARISRYSYR KVQRLPIE ISQASANQR+GRCGRV PGIC+RLY E DF 
Sbjct: 366  GIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYSEEDFI 425

Query: 415  NRPEFTDPEILRTNLASVILQMLSIGLGDIEGFPFIQPPDARYIRDGFLLLEELQSVRKH 474
             RPEFTDPEILRTNLA+VILQML + LG+I  FPFI+PPD + I DGF LL+EL +V ++
Sbjct: 426  GRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELSAVDRN 485

Query: 475  KGQLQLTPLGRQLASIPVDPRLARMVVQAKEYGCLHETLVITAGLSIQDPRERPMDKKQA 534
                QLTPLGRQLA +PVDPR+ RM+++A + G L E L++ + +SIQDPRERP +++QA
Sbjct: 486  S---QLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQQA 542

Query: 535  ADEAHRRFNDKDSDFIAWVKLWDHIKEQQKALSASQFRKLCKQEFLAYLRVREWQDLYTQ 594
            AD+AH ++ D DSDF   V LW   +EQ++ L+AS  R  C++ FL YLR+REW+D + Q
Sbjct: 543  ADQAHAQWKDPDSDFAGLVNLWRGFEEQRQELTASPLRNWCRKNFLNYLRLREWRDSHRQ 602

Query: 595  LRQAVHDLKWKLNSEPADYELLHKSLLTGLLSHIGFKDKDNEYLGARNRKFFVFPGSPLA 654
            L     D++  +N EPAD+  LHK++L+GLLS IG K +D +YLGAR R+F++ P S + 
Sbjct: 603  LSLICRDMQLTVNKEPADFPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWIHPSSGIG 662

Query: 655  KKGPKWIMAAEMTETSRLFARCCAKIQPEWVEPLAGHLVKKSYVEPHFEAKQGSVVALEN 714
            KK P+W+M AE+ ET++L+AR  AKI  +W+EPLAGHL+KK++ EPH+E K+G VVA E 
Sbjct: 663  KKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAFEQ 722

Query: 715  QQLYGLTIVNRRRVQYGPVEPVEAREIFIRSALAEGELRTKEAFFVNNRALIDDIEALEH 774
              L+GL +V RR V YGP++PV +RE+FIR  L  GE++++      N+ L++ ++ LE 
Sbjct: 723  ITLFGLIVVGRRPVHYGPIDPVVSRELFIREGLVRGEIQSRAKCLTANQQLLEQLDELEA 782

Query: 775  KSRRRDILVDEQALVDFYEARIPEGIYNAPKLLTWWKQEKKRQPHLLDFEREQLMKRSDE 834
            K+RRRDIL DE+ L  FY+AR+P  I+      +W+K   ++ P LL    E ++ R   
Sbjct: 783  KARRRDILADEETLYAFYDARLPAEIHQTATFDSWYKINSQKDPQLLIMREEDVLAREAS 842

Query: 835  HISALDFPDSWHQGNFNLPLSYHFEPADVDDGVSVHLPVALLNQIEAQGFDWLVPGLREE 894
             ++A  +PD+ H G+  L LSYHFEP    DGV++ +P  LL  +  +  +WLVPG+ E 
Sbjct: 843  EVTAAHYPDTLHLGDLELALSYHFEPNHPRDGVTLRVPAPLLPALPPERLEWLVPGVIEA 902

Query: 895  KITALIKSLPKTLRRNFVPAPDYARACLQAMANTNSSSETSLLEAMCKQLLRMSGVRISV 954
            K  AL+++LPK LR+NFVP PD+ +A LQ +       + SL +A+ ++LLRM+G R+S 
Sbjct: 903  KCIALVRNLPKALRKNFVPVPDFVKAALQRI----EFGQGSLPQALGRELLRMTGARVSD 958

Query: 955  DDF--DLTQLAPHLLINFKVEDDKGKLIAQGRELEQLKDKLQGRVTQAIRNVAESGIEQS 1012
            + +     Q+  HL +N +V D +GK + +GR+L +L  +     +QA   V ++   Q 
Sbjct: 959  EAWAEAAQQVESHLKMNLEVVDGQGKFLGEGRDLAELTARF-AEASQAALAVPQTAKSQQ 1017

Query: 1013 ELTQWSFGDLPKQYEKKRGNFQVKAFPALVDNKDSVAIKLFDDEHEAGRCHKAGLQRLLL 1072
             +    F  + ++ ++K     +  +PALV+   +V    F    EA   H+  LQRLL+
Sbjct: 1018 PVEAKVFAAVAEKTQQKIAGLSMTVYPALVEEGGTVKEGRFSTAAEAEFQHRRALQRLLM 1077

Query: 1073 LNMPSPVKHLQNTLPNKAKLAMYFNPFGQVQYLIDDILSAAVQQLLDEKGLDV-RSAEQF 1131
              +  P K L+  LP   +L + +   G++  L++DIL A++   + E   ++ R     
Sbjct: 1078 QQLAEPAKFLRGKLPGLTELGLMYRELGRIDALVEDILLASLDTCVLEGETNLPRDGAGL 1137

Query: 1132 EQAKDVVRQDLNPTAAKIALQVEEILTLYQKVKKRLKGKISLDIAFAMSDIQTQLDNLVF 1191
                +  R      A ++A    ++L L+  ++KR KGKI L  A A++DI+ QL +LV+
Sbjct: 1138 AALAERKRGSWTEHAERLARLTLDVLKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVY 1197

Query: 1192 KGFVEQCGWQRLSDLIRYIKAIDNRLDKLPVDPNRDRLHLHSINNVQQTLAAQLAKVPRS 1251
             GFV +       +L RY+KAI+ RL+KLP    +DR+    +  +      +L K  + 
Sbjct: 1198 PGFVRETPAHWFKELPRYLKAIELRLEKLPSQVQKDRVWSGELAGLWTHYENRLKKHAQE 1257

Query: 1252 APVPEALQEARWMIEEYRVSCFAQVLGTAYPISEKRI 1288
                  L+  RW +EEYRVS FAQ LGT  PIS+KR+
Sbjct: 1258 GKRDPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRL 1294