Pairwise Alignments

Query, 604 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella loihica PV-4

Subject, 595 a.a., lipid A export permease/ATP-binding protein MsbA from Magnetospirillum magneticum AMB-1

 Score =  388 bits (996), Expect = e-112
 Identities = 222/583 (38%), Positives = 347/583 (59%), Gaps = 26/583 (4%)

Query: 22  PLKGVLFLSVFGLVLYGLVDATFIYSIKPFIDQGFASNVPTTPGLVEGVDLGMGGGFNSD 81
           P  G +  +VF +V+    +A +   + P +++ F    P                    
Sbjct: 26  PYMGKVMAAVFCMVVGAAANAGYALLMDPVVNKIFTEKRP-------------------- 65

Query: 82  SDVLKTAPFVVIGLFTLRGLANFLSTYGISYISARMIMDMRQQVFEHYLRLPVSYIDAES 141
            + L      V+G F ++ + N+     +S +  R+I DM+ ++F H +RL V++  A S
Sbjct: 66  -EFLLPLALAVLGTFAVKSVCNYGEAVFLSKVGLRVIADMQSRLFAHLMRLDVAFFHANS 124

Query: 142 SGNLISRVTFDTEQIARASGSALITIVRDGITVIGMLGVMFYNSWKLSLCILIVGPLIGL 201
           +G ++SR+T D  Q+  A   AL    +D  +VI ++G MFY  W+LS     + P+  L
Sbjct: 125 TGRILSRLTNDISQMRFAVSDALTGAGKDASSVIFLIGAMFYQDWRLSAWTFFIFPIAIL 184

Query: 202 VIAVVSRKFRKVSKQIQTAMGGVTSVTEQMIKGHKNVLVFGGQQAESQRFAKVNDDNRSR 261
            I  + R+ RKV+   Q  MG +T+  EQ ++G + V  +G ++ E ++   + +  +  
Sbjct: 185 PIRKLGRRMRKVTANTQEHMGQLTTYLEQAVQGIRVVKAYGMEEYEKRKVGALVEMLQDL 244

Query: 262 TMKLALAQAISQPLVMVIGSLALAFVLYASSLESMRADLTAGTFATILAAMLAMLQPIKS 321
             K A  ++ S P++ ++G +A+  V+       +  + T G F + + A++   +PIKS
Sbjct: 245 IYKAARVRSASSPIMELLGGIAITVVILYGGTRVVNGETTPGAFFSFITALMLAYRPIKS 304

Query: 322 LTRVNAEFQRGIAACSTIFAVLDTPAEV--DNGTFETKRVEGRLSFDKVNFRYNNQEGLA 379
           L  +N   Q G+AA S  F+VLDT   +   +G  +   +EG +SF+ V F Y+  + + 
Sbjct: 305 LAAMNTNLQEGLAAASRTFSVLDTQPTIFEKDGAADLVVLEGNVSFEGVFFTYDGSKAV- 363

Query: 380 LKEVDFQVNPGETLALVGRSGSGKSTIASLITRFYSDLDSGDIRLDDVSLRDYKLAALRR 439
           L  +D  V  G+T+ALVG SG+GKST+ +L+ RFY D+  G + +D   +R+  L++LR 
Sbjct: 364 LDGIDLAVPGGKTVALVGPSGAGKSTVLNLLPRFY-DVTDGHVLVDGQDVRNVSLSSLRS 422

Query: 440 QVALVSQQVTLINDTIAANIAYAYPGEVTEEQIIDAAKLANAWEFICNMPEGIYTQVGEN 499
           ++ALVSQ++TL +D+I ANIAY   G  T+E+I  AA+ A A +FI ++PEG  T VGE 
Sbjct: 423 KIALVSQEITLFDDSIRANIAYGRFG-ATDEEIEAAARSAAAHDFIVSLPEGYDTVVGER 481

Query: 500 GVMLSGGQRQRIAIARAILRDAPILILDEATSALDTESEKAIQTGLDNLRQNRTSIVIAH 559
           G+ LSGGQRQR+AIARA+L++APIL+LDEATSALDTESE+ +QT L+ L + RT+IVIAH
Sbjct: 482 GLNLSGGQRQRLAIARAMLKNAPILLLDEATSALDTESERQVQTALELLMRGRTTIVIAH 541

Query: 560 RLSTVENANQILVVDQGKVVERGTHSELLAKQGIYYNLYQMQF 602
           RLSTV NA+ I V+D+G+V+E G H+ L+AK G Y  LY MQF
Sbjct: 542 RLSTVVNADLIHVLDKGRVIESGDHNALMAKNGTYARLYAMQF 584