Pairwise Alignments

Query, 604 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella loihica PV-4

Subject, 582 a.a., lipid A ABC transporter ATP-binding protein/permease MsbA from Escherichia coli ECRC99

 Score =  590 bits (1521), Expect = e-173
 Identities = 301/603 (49%), Positives = 425/603 (70%), Gaps = 22/603 (3%)

Query: 1   MTNSSKSEVGSVFLRLLTYLVPLKGVLFLSVFGLVLYGLVDATFIYSIKPFIDQGFASNV 60
           M N         F RL   + P K  L ++   L+L    D   +  +KP +D GF    
Sbjct: 1   MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGK-- 58

Query: 61  PTTPGLVEGVDLGMGGGFNSDSDVLKTAPFVVIGLFTLRGLANFLSTYGISYISARMIMD 120
                              +D  VL   P VVIGL  LRG+ +++S+Y IS++S +++M 
Sbjct: 59  -------------------TDRSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMT 99

Query: 121 MRQQVFEHYLRLPVSYIDAESSGNLISRVTFDTEQIARASGSALITIVRDGITVIGMLGV 180
           MR+++F H + +PVS+ D +S+G L+SR+T+D+EQ+A +S  ALIT+VR+G ++IG+  +
Sbjct: 100 MRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIM 159

Query: 181 MFYNSWKLSLCILIVGPLIGLVIAVVSRKFRKVSKQIQTAMGGVTSVTEQMIKGHKNVLV 240
           MFY SW+LS+ ++++ P++ + I VVS++FR +SK +Q  MG VT+  EQM+KGHK VL+
Sbjct: 160 MFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLI 219

Query: 241 FGGQQAESQRFAKVNDDNRSRTMKLALAQAISQPLVMVIGSLALAFVLYASSLESMRADL 300
           FGGQ+ E++RF KV++  R + MK+  A +IS P++ +I SLALAFVLYA+S  S+   L
Sbjct: 220 FGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSL 279

Query: 301 TAGTFATILAAMLAMLQPIKSLTRVNAEFQRGIAACSTIFAVLDTPAEVDNGTFETKRVE 360
           TAGT   + ++M+A+++P+KSLT VNA+FQRG+AAC T+F +LD+  E D G    +R  
Sbjct: 280 TAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRVIERAT 339

Query: 361 GRLSFDKVNFRYNNQEGLALKEVDFQVNPGETLALVGRSGSGKSTIASLITRFYSDLDSG 420
           G + F  V F Y  ++  AL+ ++ ++  G+T+ALVGRSGSGKSTIASLITRFY D+D G
Sbjct: 340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-DIDEG 398

Query: 421 DIRLDDVSLRDYKLAALRRQVALVSQQVTLINDTIAANIAYAYPGEVTEEQIIDAAKLAN 480
           +I +D   LR+Y LA+LR QVALVSQ V L NDT+A NIAYA   + + EQI +AA++A 
Sbjct: 399 EILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAY 458

Query: 481 AWEFICNMPEGIYTQVGENGVMLSGGQRQRIAIARAILRDAPILILDEATSALDTESEKA 540
           A +FI  M  G+ T +GENGV+LSGGQRQRIAIARA+LRD+PILILDEATSALDTESE+A
Sbjct: 459 AMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518

Query: 541 IQTGLDNLRQNRTSIVIAHRLSTVENANQILVVDQGKVVERGTHSELLAKQGIYYNLYQM 600
           IQ  LD L++NRTS+VIAHRLST+E A++I+VV+ G +VERGTH++LL  +G+Y  L++M
Sbjct: 519 IQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKM 578

Query: 601 QFG 603
           QFG
Sbjct: 579 QFG 581